Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   LKM46_RS07685 Genome accession   NZ_CP086016
Coordinates   1611332..1612792 (+) Length   486 a.a.
NCBI ID   WP_079387369.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa isolate KB-PA_3     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1606332..1617792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LKM46_RS07665 (LKM46_07660) - 1607017..1608588 (-) 1572 WP_033976455.1 DUF4129 domain-containing protein -
  LKM46_RS07670 (LKM46_07665) - 1608575..1609555 (-) 981 WP_033973694.1 stage II sporulation protein M -
  LKM46_RS07675 (LKM46_07670) - 1609552..1610349 (-) 798 WP_023443546.1 RDD family protein -
  LKM46_RS07680 (LKM46_07675) - 1610387..1611124 (-) 738 WP_033973696.1 integral membrane protein -
  LKM46_RS07685 (LKM46_07680) sbcB 1611332..1612792 (+) 1461 WP_079387369.1 exodeoxyribonuclease I Machinery gene
  LKM46_RS07690 (LKM46_07685) - 1612921..1613166 (-) 246 WP_034028439.1 hypothetical protein -
  LKM46_RS07695 (LKM46_07690) - 1613297..1613947 (-) 651 WP_074227104.1 phage protease -
  LKM46_RS07700 (LKM46_07695) - 1613947..1614612 (-) 666 WP_003150342.1 hypothetical protein -
  LKM46_RS07705 (LKM46_07700) - 1614642..1615109 (-) 468 WP_174484972.1 Mor transcription activator family protein -
  LKM46_RS07710 (LKM46_07705) - 1615314..1615757 (-) 444 WP_003150338.1 phage protease -
  LKM46_RS07715 (LKM46_07710) - 1615951..1616604 (-) 654 WP_003150335.1 Mor transcription activator family protein -
  LKM46_RS07720 (LKM46_07715) - 1616778..1617008 (-) 231 WP_128571766.1 hypothetical protein -
  LKM46_RS07725 (LKM46_07720) - 1617005..1617658 (-) 654 WP_003150333.1 hypothetical protein -

Sequence

Protein


Download         Length: 486 a.a.        Molecular weight: 56151.51 Da        Isoelectric Point: 5.4313

>NTDB_id=539825 LKM46_RS07685 WP_079387369.1 1611332..1612792(+) (sbcB) [Pseudomonas aeruginosa isolate KB-PA_3]
MPPEREWTVNASIFWYDYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLITGITPQRLAERG
LSEADFMARVHAQLAQPATCVAGYNSLRFDDEVTRYSLYRNFFDPYAREWQGGNSRWDLIDMVRTAYALRPEGIQWPEVD
GRVSLKLELLTAANGLEHGQAHDALSDVRATIALARLIRQRQPRLYDYLYQLRSKHKVLDQVRLLQPLVHVSGRFSAERH
FLSVVLPLAWHPRNRNALIVCDLCAEPAPLLELSAEELRRRLYTRRDELAEGELPVPLKQIQVNRCPVVAPLSVLRAEDR
QRTGIELEECQRKAELLRQHQTVWADKLAALYGEESFSASDDPEQQLYDGFIGDRDRRLCEQLRLAEPEQLAKEQWPFDD
ARLQELFFRYRARNFPETLNVAERQQWESFCRNRLSHEEYGAPNTLPAFEAALEACRQEQGGTLPAVLAAWRDYAAELRQ
RYSLAT

Nucleotide


Download         Length: 1461 bp        

>NTDB_id=539825 LKM46_RS07685 WP_079387369.1 1611332..1612792(+) (sbcB) [Pseudomonas aeruginosa isolate KB-PA_3]
GTGCCGCCAGAAAGGGAATGGACCGTGAACGCGAGTATTTTTTGGTACGACTACGAAACCACCGGCATCGACCCTCGCCG
CGACCGGCCGTTGCAGATCGCCGGGATCCGCACGGACGAGGCGCTGAACGAGATCGGCGAGCCGATGAACCTGTATTGCC
GTCCCAGCGACGATATCCTGCCTCACCCTATGGCTTGCCTGATCACCGGCATCACCCCGCAGCGGCTGGCCGAGCGGGGG
CTGTCCGAGGCCGACTTCATGGCCCGGGTACACGCCCAGCTGGCGCAGCCGGCGACCTGCGTGGCCGGCTACAACTCCCT
GCGCTTCGACGACGAAGTGACGCGCTACAGCCTGTACCGCAACTTCTTCGATCCCTACGCCCGCGAGTGGCAAGGCGGCA
ATAGCCGCTGGGACCTGATCGACATGGTCCGTACCGCTTATGCCCTGCGCCCGGAGGGCATCCAGTGGCCGGAGGTGGAT
GGCCGCGTCTCGCTGAAGCTGGAGCTGCTCACCGCGGCGAATGGCCTGGAACATGGCCAGGCCCACGACGCGCTGTCCGA
TGTTCGCGCGACCATCGCCCTGGCCCGCCTGATCCGTCAGCGCCAGCCGCGCCTGTACGATTACCTCTACCAGTTGCGCA
GCAAGCACAAGGTGCTCGACCAGGTCCGCCTGCTGCAGCCGCTGGTGCATGTCTCCGGGCGCTTTTCCGCGGAGCGCCAT
TTCCTCTCGGTGGTCCTGCCGCTGGCCTGGCACCCGCGCAACCGCAATGCCCTGATCGTCTGCGACCTGTGTGCCGAGCC
CGCACCGCTGCTGGAACTGTCCGCCGAGGAGCTGCGCCGGCGCCTGTATACCCGTCGCGACGAACTGGCCGAGGGCGAGT
TGCCGGTGCCGCTGAAGCAGATCCAGGTCAACCGTTGCCCGGTGGTGGCGCCGCTGTCGGTATTGCGCGCCGAGGATCGC
CAGCGAACCGGCATCGAACTCGAGGAGTGCCAGCGAAAAGCCGAGCTGTTGCGCCAGCATCAAACCGTCTGGGCGGACAA
ACTGGCAGCGCTATATGGCGAAGAAAGTTTCTCCGCCAGCGACGACCCCGAACAACAGTTGTATGACGGATTTATTGGTG
ATCGGGATCGACGCCTTTGTGAACAGCTGCGCCTTGCCGAACCGGAGCAATTGGCCAAAGAACAATGGCCCTTCGACGAT
GCCCGCTTGCAGGAGTTGTTCTTCCGTTATCGTGCGCGAAATTTCCCGGAAACTTTAAATGTGGCCGAGCGCCAACAATG
GGAAAGCTTCTGCCGCAATCGTTTGTCCCATGAAGAATACGGCGCACCGAATACTTTGCCGGCCTTCGAGGCGGCGCTGG
AGGCTTGTCGGCAAGAGCAGGGCGGCACATTGCCGGCGGTACTTGCGGCCTGGCGCGATTACGCCGCGGAACTGCGTCAA
CGCTATTCGCTGGCGACTTGA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(15-194)

Exonuclease C-terminal (ExoI_SH3)

(213-476)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

50

87.654

0.438