Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   LKM46_RS02025 Genome accession   NZ_CP086016
Coordinates   444612..445943 (+) Length   443 a.a.
NCBI ID   WP_033986105.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa isolate KB-PA_3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 439612..450943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LKM46_RS02005 (LKM46_02005) - 440449..441015 (-) 567 WP_003117889.1 hypothetical protein -
  LKM46_RS02010 (LKM46_02010) rsmD 441018..441614 (-) 597 WP_003102864.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  LKM46_RS02015 (LKM46_02015) - 441614..443101 (-) 1488 WP_003102862.1 M16 family metallopeptidase -
  LKM46_RS02020 (LKM46_02020) - 443094..444491 (-) 1398 WP_003084498.1 M16 family metallopeptidase -
  LKM46_RS02025 (LKM46_02025) pilA 444612..445943 (+) 1332 WP_033986105.1 signal recognition particle-docking protein FtsY Machinery gene
  LKM46_RS02030 (LKM46_02030) ftsE 445940..446611 (+) 672 WP_003084505.1 cell division ATP-binding protein FtsE -
  LKM46_RS02035 (LKM46_02035) ftsX 446611..447618 (+) 1008 WP_003084508.1 permease-like cell division protein FtsX -
  LKM46_RS02040 (LKM46_02040) rpoH 447732..448586 (+) 855 WP_003084510.1 RNA polymerase sigma factor RpoH -
  LKM46_RS02045 (LKM46_02045) - 448651..449256 (+) 606 WP_003084511.1 hypothetical protein -
  LKM46_RS02050 (LKM46_02050) mtgA 449261..449992 (-) 732 WP_003100972.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  LKM46_RS02055 (LKM46_02055) - 450029..450406 (+) 378 WP_003084513.1 DUF423 domain-containing protein -
  LKM46_RS02060 (LKM46_02060) thiS 450509..450709 (+) 201 WP_003084514.1 sulfur carrier protein ThiS -

Sequence

Protein


Download         Length: 443 a.a.        Molecular weight: 47122.49 Da        Isoelectric Point: 4.6728

>NTDB_id=539798 LKM46_RS02025 WP_033986105.1 444612..445943(+) (pilA) [Pseudomonas aeruginosa isolate KB-PA_3]
MFGSNDDKKAPQGGEKKGLFGWWRKKPQAGEQPADQPVEPVSETAAAEQRAPADDVAQSLTEQPGRQQPSAAEPAPVAEA
PLASDEPASAEEHSPRPEAPVAQPEPILAAEPEPEPEPVAPLAAAPAVSEPATRPGFFARLRQGLSKTSASIGEGMASLF
LGRKEIDDDLLDDIETRLLTADVGVEATTLIVQNLTKRVARKELADSGALYKALQEELASLLRPVEQPLQVDVAREPYVI
LVVGVNGVGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNRIPVIAQHTGADSASVIFDAVQAAKARGI
DVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAINQAKQFNLAVELTGLALTKLDGTAKGGV
IFALAKQFGLPIRYIGVGEGIDDLRTFEADAFVQALFAERENA

Nucleotide


Download         Length: 1332 bp        

>NTDB_id=539798 LKM46_RS02025 WP_033986105.1 444612..445943(+) (pilA) [Pseudomonas aeruginosa isolate KB-PA_3]
ATGTTTGGTTCCAACGACGACAAGAAGGCCCCGCAGGGCGGGGAAAAGAAAGGTCTGTTCGGCTGGTGGCGGAAAAAGCC
GCAAGCCGGCGAGCAGCCTGCCGATCAGCCTGTCGAGCCGGTCTCCGAGACAGCGGCCGCCGAGCAGCGCGCGCCTGCCG
ATGACGTGGCGCAATCCCTGACAGAACAGCCAGGTCGGCAGCAGCCCTCCGCTGCCGAGCCGGCGCCGGTTGCCGAAGCA
CCGCTCGCCAGTGACGAGCCAGCGTCGGCCGAGGAGCATTCGCCCCGGCCCGAGGCGCCCGTCGCGCAACCCGAGCCTAT
CCTGGCTGCCGAGCCCGAGCCCGAGCCCGAGCCCGTTGCGCCTCTGGCCGCCGCTCCGGCAGTCAGCGAGCCGGCGACCA
GGCCGGGCTTCTTCGCCCGCCTCCGGCAGGGACTGTCCAAGACCAGCGCCAGCATCGGCGAAGGCATGGCCAGCCTGTTC
CTCGGCCGCAAGGAAATCGACGACGACCTGCTCGACGACATCGAGACGCGCCTGCTGACCGCCGACGTCGGCGTCGAGGC
CACCACCCTGATCGTGCAGAACCTGACCAAGCGCGTGGCGCGCAAGGAGCTGGCCGACAGCGGCGCGCTGTACAAGGCGC
TGCAGGAAGAGCTGGCCAGCCTGCTGCGCCCGGTGGAGCAGCCGTTGCAGGTCGACGTCGCGCGCGAGCCCTATGTGATC
CTGGTGGTCGGGGTGAACGGCGTGGGCAAGACCACCACCATCGGCAAGCTGGCGAAGAAGCTGCAACTCGAGGGCAAGAA
GGTCATGCTGGCCGCCGGCGACACCTTCCGCGCCGCCGCCGTGGAGCAGTTGCAGGTCTGGGGCGAGCGCAACCGCATCC
CGGTGATCGCCCAGCACACCGGCGCCGACTCCGCCTCGGTGATCTTCGACGCGGTGCAGGCCGCCAAGGCCCGCGGCATC
GACGTGCTGATCGCCGATACCGCCGGACGCCTGCATACCAAGGACAACCTGATGGAGGAGCTGAAGAAGGTGCGCCGGGT
GATCGGCAAGCTGGACGAGACGGCGCCCCATGAGGTCCTGCTGGTGCTCGACGCCGGCACCGGGCAGAACGCCATCAACC
AGGCCAAGCAGTTCAACCTCGCGGTGGAGCTGACCGGCCTGGCCCTGACCAAACTGGACGGCACCGCCAAGGGCGGGGTG
ATCTTCGCCCTGGCCAAGCAGTTCGGCCTGCCGATCCGCTATATCGGTGTCGGCGAGGGGATCGACGATCTCCGTACCTT
CGAGGCCGACGCCTTCGTCCAGGCACTCTTCGCAGAGCGGGAGAACGCATGA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(238-437)

SRP54-type protein, helical bundle domain (SRP54_N)

(153-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

47.897

96.614

0.463