Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   LKM46_RS00105 Genome accession   NZ_CP086016
Coordinates   23216..24241 (+) Length   341 a.a.
NCBI ID   WP_003097294.1    Uniprot ID   A0A0H2ZJL6
Organism   Pseudomonas aeruginosa isolate KB-PA_3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 18216..29241
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LKM46_RS00085 (LKM46_00085) trkA 18870..20243 (-) 1374 WP_003107053.1 Trk system potassium transporter TrkA -
  LKM46_RS00090 (LKM46_00090) rsmB 20271..21575 (-) 1305 WP_033968208.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  LKM46_RS00095 (LKM46_00095) fmt 21572..22516 (-) 945 WP_033968207.1 methionyl-tRNA formyltransferase -
  LKM46_RS00100 (LKM46_00100) def 22571..23077 (-) 507 WP_003097293.1 peptide deformylase -
  LKM46_RS00105 (LKM46_00105) tsaP 23216..24241 (+) 1026 WP_003097294.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  LKM46_RS00110 (LKM46_00110) dprA 24377..25465 (+) 1089 WP_003123764.1 DNA-processing protein DprA Machinery gene
  LKM46_RS00115 (LKM46_00115) - 25506..26063 (+) 558 WP_033968205.1 L-threonylcarbamoyladenylate synthase -
  LKM46_RS00120 (LKM46_00120) - 26073..27050 (-) 978 WP_033978596.1 NADPH:quinone reductase -
  LKM46_RS00125 (LKM46_00125) hemF 27241..28158 (+) 918 WP_003097311.1 oxygen-dependent coproporphyrinogen oxidase -
  LKM46_RS00130 (LKM46_00130) aroE 28216..29040 (+) 825 WP_033978595.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37586.01 Da        Isoelectric Point: 9.3358

>NTDB_id=539795 LKM46_RS00105 WP_003097294.1 23216..24241(+) (tsaP) [Pseudomonas aeruginosa isolate KB-PA_3]
MRKSLVALLLLAASGLAQAQVDLREGHPDRYTVVRGDTLWDISGKFLRQPWKWPELWHANPQIQNPHLIYPGDTLSLVYV
DGQPRLVLNRGESRGTIKLSPKIRSTPIAEAIPTIPLDKINSFLLANRIVDDEKTFTSAPYIVAGNAERIVSGTGDRIYA
RGKFADGQPAYGIFRQGKVYIDPKTKEVLGINADDIGGGEVVATEGDVATLALTRTTQEVRLGDRLFPTEERAVNSTFMP
GEPSREVKGEIIDVPRGVTQIGQFDVVTLNRGQRDGLAEGNVLAIYKVGETVRDRVTGESVKIPDERAGLLMVFRTYKKL
SYALVLMASRPLSVTDRVQNP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=539795 LKM46_RS00105 WP_003097294.1 23216..24241(+) (tsaP) [Pseudomonas aeruginosa isolate KB-PA_3]
ATGAGGAAATCACTAGTCGCCCTTCTGCTCCTTGCCGCGAGCGGTCTGGCGCAGGCCCAGGTCGACCTCAGGGAAGGGCA
TCCGGACCGCTACACGGTGGTCAGGGGCGATACCCTGTGGGACATCTCGGGGAAATTCCTCCGTCAGCCATGGAAGTGGC
CGGAACTCTGGCACGCCAACCCGCAGATCCAGAATCCCCACCTGATCTACCCCGGCGACACCCTCAGCCTGGTCTACGTC
GATGGCCAGCCGCGCCTGGTGTTGAACCGTGGCGAATCACGCGGGACCATCAAGCTGTCGCCGAAGATCCGCAGCACGCC
GATCGCCGAGGCCATCCCGACCATCCCGCTGGACAAGATCAACAGCTTCCTGCTGGCCAACCGCATCGTCGATGACGAGA
AGACCTTCACCAGCGCGCCGTACATCGTCGCCGGCAACGCCGAGCGGATCGTCAGCGGCACCGGCGACCGCATCTATGCC
CGCGGCAAGTTCGCCGACGGCCAGCCGGCCTATGGCATCTTCCGCCAGGGCAAGGTCTACATCGATCCGAAGACCAAGGA
AGTCCTCGGCATCAACGCCGACGACATCGGCGGCGGCGAGGTGGTGGCCACCGAAGGCGACGTCGCGACCCTGGCGCTGA
CCCGCACCACCCAGGAAGTGCGCCTGGGCGACCGTCTGTTTCCCACCGAGGAGCGTGCGGTGAATTCCACCTTCATGCCC
GGCGAGCCGAGCCGCGAGGTGAAGGGCGAAATCATCGACGTACCGCGCGGCGTTACCCAGATCGGCCAGTTCGACGTGGT
CACCCTGAACCGTGGCCAGCGCGACGGGCTGGCCGAGGGCAACGTGCTGGCGATCTACAAGGTCGGCGAGACGGTGCGCG
ACCGCGTTACCGGTGAGTCGGTGAAGATTCCCGACGAACGCGCCGGCCTGCTGATGGTGTTCCGTACCTACAAGAAGCTG
AGCTACGCCCTGGTTCTGATGGCCAGCAGGCCGCTCTCGGTAACCGACAGGGTGCAGAATCCCTGA

Domains

Predicted by InterProScan.

LysM domain (LysM)

(31-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZJL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

36.512

100

0.393