Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilZ   Type   Machinery gene
Locus tag   LLH04_RS10895 Genome accession   NZ_CP086010
Coordinates   2275966..2276322 (+) Length   118 a.a.
NCBI ID   WP_003091119.1    Uniprot ID   A0A0H2ZD30
Organism   Pseudomonas aeruginosa isolate KB-PA_F19     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2270966..2281322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLH04_RS10870 (LLH04_10870) fabF 2271178..2272422 (+) 1245 WP_003104132.1 beta-ketoacyl-ACP synthase II -
  LLH04_RS10875 (LLH04_10875) pabC 2272422..2273237 (+) 816 WP_003110198.1 aminodeoxychorismate lyase -
  LLH04_RS10880 (LLH04_10880) mltG 2273243..2274292 (+) 1050 WP_003104128.1 endolytic transglycosylase MltG -
  LLH04_RS10885 (LLH04_10885) tmk 2274321..2274953 (+) 633 WP_003091125.1 dTMP kinase -
  LLH04_RS10890 (LLH04_10890) - 2274946..2275932 (+) 987 WP_010793191.1 DNA polymerase III subunit delta' -
  LLH04_RS10895 (LLH04_10895) pilZ 2275966..2276322 (+) 357 WP_003091119.1 PilZ domain-containing protein Machinery gene
  LLH04_RS10900 (LLH04_10900) - 2276337..2277113 (+) 777 WP_228214478.1 TatD family hydrolase -
  LLH04_RS10905 (LLH04_10905) - 2277339..2278472 (-) 1134 WP_010793190.1 aminotransferase class V-fold PLP-dependent enzyme -
  LLH04_RS10910 (LLH04_10910) - 2278558..2279196 (+) 639 WP_003091114.1 TetR/AcrR family transcriptional regulator -
  LLH04_RS10915 (LLH04_10915) - 2279346..2280242 (+) 897 WP_003091113.1 radical SAM protein -
  LLH04_RS10920 (LLH04_10920) - 2280307..2280939 (+) 633 WP_010793189.1 DUF4823 domain-containing protein -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 12903.98 Da        Isoelectric Point: 9.9969

>NTDB_id=539726 LLH04_RS10895 WP_003091119.1 2275966..2276322(+) (pilZ) [Pseudomonas aeruginosa isolate KB-PA_F19]
MSLPPNLGPRNGILSLTIKDKSVLYAAYMPFIRNGGLFIPTNKNYKLGDEVFMLLNLMEEPEKIPVAGKVVWITPKGAQG
NRAAGIGVQFNDGDNTARNKIETYLAGALKSDRPTHTM

Nucleotide


Download         Length: 357 bp        

>NTDB_id=539726 LLH04_RS10895 WP_003091119.1 2275966..2276322(+) (pilZ) [Pseudomonas aeruginosa isolate KB-PA_F19]
ATGAGTTTGCCACCCAATCTGGGGCCGCGTAACGGCATCCTGTCCTTGACCATCAAGGACAAGTCCGTGCTGTACGCCGC
CTACATGCCGTTCATCAGGAACGGCGGGCTGTTCATTCCCACCAACAAGAACTACAAGCTCGGCGACGAAGTCTTCATGC
TGCTCAACCTGATGGAAGAGCCGGAGAAGATCCCGGTGGCCGGCAAGGTCGTCTGGATCACCCCGAAGGGCGCCCAGGGC
AACCGTGCGGCTGGCATCGGCGTGCAGTTCAACGACGGTGACAACACCGCCCGCAACAAGATCGAAACCTACCTGGCCGG
GGCGCTGAAGTCGGACCGGCCGACCCACACGATGTAA

Domains

Predicted by InterProScan.

PilZ domain (PilZ)

(17-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZD30

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilZ Legionella pneumophila str. Paris

49.074

91.525

0.449
  pilZ Legionella pneumophila strain ERS1305867

49.074

91.525

0.449