Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   LJC78_RS21700 Genome accession   NZ_CP086007
Coordinates   4065018..4065812 (-) Length   264 a.a.
NCBI ID   WP_003226939.1    Uniprot ID   A0ABU0V6L5
Organism   Bacillus subtilis subsp. natto strain SCP010-1     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 4060018..4070812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJC78_RS21665 (LJC78_21670) - 4060150..4060704 (-) 555 WP_015715050.1 SdpA family antimicrobial peptide system protein -
  LJC78_RS21670 (LJC78_21675) - 4060888..4061523 (-) 636 WP_014481470.1 SdpI family protein -
  LJC78_RS21675 (LJC78_21680) - 4061523..4061807 (-) 285 WP_015715052.1 autorepressor SdpR family transcription factor -
  LJC78_RS21680 (LJC78_21685) rocR 4062034..4063419 (+) 1386 WP_003244510.1 arginine utilization regulatory protein RocR -
  LJC78_RS21685 (LJC78_21690) - 4063401..4063553 (-) 153 Protein_4226 ATP-binding protein -
  LJC78_RS21690 (LJC78_21695) - 4063581..4063713 (-) 133 Protein_4227 hypothetical protein -
  LJC78_RS21695 (LJC78_21700) htrA 4063734..4064936 (-) 1203 WP_014481472.1 serine protease HtrC Regulator
  LJC78_RS21700 (LJC78_21705) vicX 4065018..4065812 (-) 795 WP_003226939.1 MBL fold metallo-hydrolase Regulator
  LJC78_RS21705 (LJC78_21710) walI 4065834..4066676 (-) 843 WP_014481473.1 WalRK two-component regulatory system regulator WalI -
  LJC78_RS21710 (LJC78_21715) walH 4066663..4068030 (-) 1368 WP_014481474.1 WalRK two-component regulatory system regulator WalH -
  LJC78_RS21715 (LJC78_21720) walK 4068020..4069855 (-) 1836 WP_009968432.1 cell wall metabolism sensor histidine kinase WalK -
  LJC78_RS21720 (LJC78_21725) walR 4069863..4070570 (-) 708 WP_003244363.1 cell wall metabolism DNA-binding response regulator WalR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29283.28 Da        Isoelectric Point: 5.8036

>NTDB_id=539690 LJC78_RS21700 WP_003226939.1 4065018..4065812(-) (vicX) [Bacillus subtilis subsp. natto strain SCP010-1]
MSLQFSVLASGSTGNAFYLETEDHAFLVDAGLSGKAMDGLMAQIGRKLDDVDGIFVTHEHSDHIKGLGVVARKYKLPIYA
NEKTWKAMENQIGKIDTDQKFVFPMETVKSFGGLDVESFGVSHDAAEPMFYVFHYNGRKLALMTDTGYVSDRMKGIIRSA
NVFVFESNHDVGMLQMGRYPWSIKRRILSDVGHVSNEDAALAMTDVIGDETSRIYLAHLSQDNNMKELARMSVQQTLASK
GFVTGETFDLYDTDPKKATPLCAV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=539690 LJC78_RS21700 WP_003226939.1 4065018..4065812(-) (vicX) [Bacillus subtilis subsp. natto strain SCP010-1]
ATGAGCTTGCAATTTAGCGTACTTGCGAGCGGGAGTACGGGAAATGCGTTTTACCTTGAAACAGAGGATCACGCATTTTT
AGTGGACGCCGGTTTGAGCGGGAAAGCCATGGATGGGCTGATGGCGCAGATCGGGCGTAAGCTGGATGATGTAGACGGCA
TTTTTGTGACGCATGAGCATAGTGACCATATTAAGGGCCTTGGTGTGGTCGCCAGAAAGTACAAGCTTCCGATCTATGCG
AATGAGAAGACTTGGAAAGCGATGGAGAATCAAATCGGGAAAATTGACACCGATCAAAAGTTTGTATTTCCGATGGAAAC
AGTGAAGTCGTTCGGCGGACTTGATGTTGAATCATTTGGCGTTTCCCACGATGCGGCCGAGCCGATGTTTTATGTATTCC
ATTATAACGGCCGAAAGCTCGCGTTAATGACAGATACGGGATATGTCAGCGACCGGATGAAAGGCATTATCCGTTCAGCG
AATGTGTTTGTGTTTGAAAGCAATCATGATGTCGGCATGCTGCAAATGGGAAGATACCCGTGGAGCATTAAGCGGCGGAT
TTTAAGTGACGTCGGGCACGTGTCAAATGAAGATGCTGCCTTGGCGATGACGGATGTCATTGGCGATGAGACGTCTCGTA
TTTACCTGGCGCATTTGAGCCAGGACAACAACATGAAGGAGCTGGCAAGAATGTCTGTGCAGCAGACATTGGCTTCTAAA
GGATTTGTGACGGGTGAGACATTTGACTTATACGACACCGATCCGAAGAAGGCCACTCCGCTTTGCGCTGTATAA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(12-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

53.435

99.242

0.53