Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Regulator
Locus tag   LJC78_RS16305 Genome accession   NZ_CP086007
Coordinates   3035665..3036528 (-) Length   287 a.a.
NCBI ID   WP_014480705.1    Uniprot ID   Q9FAF1
Organism   Bacillus subtilis subsp. natto strain SCP010-1     
Function   modification of ComX; production of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 3030665..3041528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJC78_RS16270 (LJC78_16270) mrpE 3030833..3031309 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  LJC78_RS16275 (LJC78_16275) mrpF 3031309..3031593 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  LJC78_RS16280 (LJC78_16280) mnhG 3031577..3031951 (+) 375 WP_014477830.1 monovalent cation/H(+) antiporter subunit G -
  LJC78_RS16285 (LJC78_16285) yuxO 3031990..3032370 (-) 381 WP_017695528.1 hotdog fold thioesterase -
  LJC78_RS16290 (LJC78_16290) comA 3032389..3033033 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  LJC78_RS16295 (LJC78_16295) comP 3033114..3035426 (-) 2313 WP_014480703.1 sensor histidine kinase Regulator
  LJC78_RS16300 (LJC78_16300) comX 3035442..3035663 (-) 222 WP_014480704.1 competence pheromone ComX -
  LJC78_RS16305 (LJC78_16305) comQ 3035665..3036528 (-) 864 WP_014480705.1 polyprenyl synthetase family protein Regulator
  LJC78_RS16310 (LJC78_16310) degQ 3036713..3036853 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  LJC78_RS16315 (LJC78_16315) - 3037075..3037200 (+) 126 WP_003228793.1 hypothetical protein -
  LJC78_RS16320 (LJC78_16320) - 3037314..3037682 (+) 369 WP_014477834.1 hypothetical protein -
  LJC78_RS16325 (LJC78_16325) pdeH 3037658..3038887 (-) 1230 WP_014480707.1 cyclic di-GMP phosphodiesterase -
  LJC78_RS16330 (LJC78_16330) pncB 3039023..3040495 (-) 1473 WP_014480708.1 nicotinate phosphoribosyltransferase -
  LJC78_RS16335 (LJC78_16335) pncA 3040511..3041062 (-) 552 WP_014480709.1 cysteine hydrolase family protein -

Sequence

Protein


Download         Length: 287 a.a.        Molecular weight: 32882.57 Da        Isoelectric Point: 5.2201

>NTDB_id=539664 LJC78_RS16305 WP_014480705.1 3035665..3036528(-) (comQ) [Bacillus subtilis subsp. natto strain SCP010-1]
MKEIVDENILNEDLKVKLISFIKEKKQFSFAELAYYHYIAFDGKNDKAIELLASGIELLILSADIFDDIEDKDNLQASWM
KLDPSIATNAATALYTLSLQVIGSVSNHPKLLSLTLQYSLQSLQGQHVDLNLTASSESEYIEMIKLKSGSLVTLPSILGV
YLATGEYNETVEEYSRYLGIVEQIANDHYGLYYPNYNDFKTRHTLAFNYLKNKFNQSSIDLLNFYAQENHMINNLEDLKG
KLRESGVIQYLNVIKNLAVENFKESFKKLRLDEQRKNKLLIQLLRGI

Nucleotide


Download         Length: 864 bp        

>NTDB_id=539664 LJC78_RS16305 WP_014480705.1 3035665..3036528(-) (comQ) [Bacillus subtilis subsp. natto strain SCP010-1]
ATGAAGGAGATTGTGGATGAAAATATTTTAAATGAGGACTTAAAAGTGAAGCTCATTTCTTTTATCAAAGAAAAAAAACA
ATTTTCATTTGCAGAACTGGCTTATTACCATTACATAGCATTTGATGGAAAAAACGACAAAGCAATTGAGTTATTGGCGT
CAGGTATAGAACTTTTAATTTTATCTGCGGACATTTTTGACGATATTGAGGATAAGGACAATCTTCAGGCTTCTTGGATG
AAATTAGATCCTTCTATAGCAACTAACGCAGCTACCGCACTTTATACATTAAGTCTGCAAGTAATAGGTTCAGTCTCAAA
TCATCCAAAACTTTTAAGCCTTACTTTGCAATATTCACTCCAATCTTTACAAGGACAACATGTAGATTTGAATTTAACAG
CCTCATCAGAATCAGAGTATATTGAAATGATTAAACTTAAGTCGGGTTCTCTGGTAACATTGCCCAGTATTCTTGGTGTA
TATCTGGCAACTGGAGAATATAATGAAACAGTTGAGGAGTATTCACGTTATTTAGGTATAGTCGAGCAAATTGCAAATGA
TCACTATGGACTTTATTACCCTAACTATAATGACTTCAAAACTAGACATACGCTTGCCTTCAATTATCTTAAAAATAAAT
TTAACCAATCATCAATTGACTTATTAAATTTTTATGCGCAAGAAAATCATATGATAAATAATTTGGAAGATTTGAAGGGA
AAGTTAAGAGAATCAGGTGTAATACAATATTTGAATGTTATAAAAAATTTAGCAGTGGAAAATTTTAAGGAATCATTCAA
AAAACTGAGATTAGATGAACAAAGAAAAAATAAATTACTTATTCAATTATTAAGGGGGATTTAA

Domains

Predicted by InterProScan.

Polyprenyl synthetase (polyprenyl_synt)

(45-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9FAF1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Bacillus subtilis subsp. subtilis str. 168

45

97.561

0.439