Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   LJC78_RS13385 Genome accession   NZ_CP086007
Coordinates   2478028..2479155 (-) Length   375 a.a.
NCBI ID   WP_014480328.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. natto strain SCP010-1     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2473028..2484155
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJC78_RS13360 (LJC78_13365) - 2473075..2473287 (-) 213 Protein_2586 recombinase family protein -
  LJC78_RS13365 (LJC78_13370) fumC 2473506..2474894 (-) 1389 WP_014480325.1 class II fumarate hydratase -
  LJC78_RS13370 (LJC78_13375) - 2475061..2475951 (+) 891 WP_014480326.1 LysR family transcriptional regulator -
  LJC78_RS13375 (LJC78_13380) - 2476893..2477288 (+) 396 WP_014480327.1 VOC family protein -
  LJC78_RS13385 (LJC78_13390) rapC 2478028..2479155 (-) 1128 WP_014480328.1 Rap family tetratricopeptide repeat protein Regulator
  LJC78_RS22225 (LJC78_13395) - 2479337..2480170 (+) 834 Protein_2591 ribonuclease YeeF family protein -
  LJC78_RS22230 (LJC78_13400) - 2480592..2481263 (+) 672 WP_228224803.1 hypothetical protein -
  LJC78_RS13400 (LJC78_13405) - 2481277..2481564 (+) 288 WP_014480331.1 hypothetical protein -
  LJC78_RS13405 (LJC78_13410) - 2481967..2482407 (+) 441 WP_014480332.1 SMI1/KNR4 family protein -
  LJC78_RS13410 (LJC78_13415) - 2482506..2482958 (+) 453 WP_014480333.1 SMI1/KNR4 family protein -
  LJC78_RS13415 (LJC78_13420) cdiI 2483055..2483414 (+) 360 WP_014480334.1 ribonuclease toxin immunity protein CdiI -
  LJC78_RS13420 (LJC78_13425) - 2483519..2483998 (+) 480 WP_224588637.1 hypothetical protein -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 44149.36 Da        Isoelectric Point: 6.0289

>NTDB_id=539644 LJC78_RS13385 WP_014480328.1 2478028..2479155(-) (rapC) [Bacillus subtilis subsp. natto strain SCP010-1]
MNPVLSSSEVGVKINEWYKMIRQFSVPDAEILKAEVEQEIQRMEEDEYLLIYFSLMKFRHQLMLDYLEPVTTRIRPTIEE
LLEKIETSNKGISGLLSYYSLFFRGMYEFDKKQYMKAIYYYREAEKQLIHVPDEIERAEFHFKLAEAYYGMKQSHVSMHH
VKQALDIYNQYELYKVRKVQCMFVISGNYTDFKHYEKSQPHLEKALKLSRELNNKRLISSALYNLGTNFADSGDYEQAEV
YIKQAVEITEKEKLTNLPHSLFSYAKILFKQGKMNEAIQVSKKGLSAALYQGDELFAKLQGYLNALYVDAVDQQGVNKTI
EYLEKNKNYSYIEDIACETAAAYANSKEFETSYVYHQKMLETQTQIQRGECLYDF

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=539644 LJC78_RS13385 WP_014480328.1 2478028..2479155(-) (rapC) [Bacillus subtilis subsp. natto strain SCP010-1]
GTGAATCCGGTTTTATCATCGTCAGAAGTTGGCGTAAAGATCAATGAATGGTATAAAATGATACGTCAATTTAGTGTCCC
GGATGCAGAGATTTTAAAGGCAGAGGTCGAGCAAGAAATCCAACGGATGGAGGAAGATGAGTATTTACTCATTTACTTCT
CCTTAATGAAATTCCGTCATCAGCTCATGTTAGATTATTTGGAACCCGTAACGACACGTATAAGACCAACTATTGAGGAA
CTTCTTGAAAAAATTGAGACTTCAAATAAAGGCATATCTGGCCTGTTATCGTATTATTCTCTGTTTTTCAGAGGGATGTA
CGAGTTTGATAAGAAGCAATACATGAAAGCTATCTACTATTATAGAGAAGCCGAAAAGCAGCTTATACATGTCCCTGATG
AGATCGAAAGGGCAGAGTTTCATTTTAAGTTAGCTGAAGCATATTATGGTATGAAGCAAAGTCATGTGTCTATGCATCAC
GTTAAACAAGCGTTGGATATTTATAATCAATATGAACTTTATAAGGTGCGAAAAGTTCAATGTATGTTTGTTATCTCAGG
GAATTATACTGATTTTAAACATTACGAAAAAAGTCAGCCGCATCTTGAAAAGGCATTAAAGTTATCTAGGGAATTGAATA
ACAAAAGGTTGATTAGTTCTGCACTATATAATTTAGGCACTAATTTTGCTGACAGTGGTGATTACGAGCAGGCGGAAGTA
TACATAAAGCAAGCAGTGGAGATTACAGAAAAAGAAAAGCTCACAAACTTGCCACATTCTTTATTTTCTTATGCAAAAAT
CCTTTTTAAACAAGGAAAAATGAATGAGGCTATCCAAGTAAGTAAGAAAGGTTTGTCAGCAGCTCTTTATCAAGGTGATG
AGCTTTTCGCAAAATTACAGGGATATTTAAATGCTCTTTATGTCGATGCAGTGGACCAACAAGGTGTTAATAAAACCATA
GAATACTTAGAAAAAAATAAGAACTATTCATATATTGAAGACATTGCCTGTGAGACCGCAGCTGCTTACGCAAACTCAAA
AGAATTTGAAACATCCTATGTATATCATCAGAAAATGCTTGAGACTCAAACACAAATTCAAAGGGGAGAATGCCTGTATG
ACTTTTAA

Domains

Predicted by InterProScan.

Tetratricopeptide repeat (TPR_12)

(195-251)

Tetratricopeptide repeat (TPR_8)

(259-287)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.415

100

0.445
  rapF Bacillus subtilis subsp. subtilis str. 168

39.418

100

0.397