Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   LJC78_RS10780 Genome accession   NZ_CP086007
Coordinates   2029961..2031736 (-) Length   591 a.a.
NCBI ID   WP_014480018.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. natto strain SCP010-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2024961..2036736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJC78_RS10760 (LJC78_10760) desE 2025334..2026392 (+) 1059 WP_004399588.1 fatty acid desaturase DesE -
  LJC78_RS10765 (LJC78_10765) desK 2026512..2027624 (+) 1113 WP_014480016.1 two-component sensor histidine kinase DesK -
  LJC78_RS10770 (LJC78_10770) desR 2027643..2028242 (+) 600 WP_004399356.1 two-component system response regulator DesR -
  LJC78_RS10775 (LJC78_10775) walN 2028850..2029713 (-) 864 WP_014480017.1 LysM peptidoglycan-binding and 3D domain-containing protein -
  LJC78_RS10780 (LJC78_10780) recQ 2029961..2031736 (-) 1776 WP_014480018.1 DNA helicase RecQ Machinery gene
  LJC78_RS10790 (LJC78_10790) azoJ 2032302..2032928 (-) 627 WP_003231260.1 FMN-dependent NADH-azoreductase AzoJ -
  LJC78_RS10795 (LJC78_10795) stpP 2033081..2033572 (-) 492 WP_014477068.1 TraR/DksA family transcriptional regulator -
  LJC78_RS10800 (LJC78_10800) - 2033647..2033979 (-) 333 WP_014480020.1 hypothetical protein -
  LJC78_RS10805 (LJC78_10805) - 2034057..2034284 (+) 228 WP_014480021.1 hypothetical protein -
  LJC78_RS10810 (LJC78_10810) yocM 2034271..2034747 (-) 477 WP_014477071.1 salt stress-responsive protein YocM -
  LJC78_RS10815 (LJC78_10815) - 2034814..2035077 (+) 264 WP_004399338.1 hypothetical protein -
  LJC78_RS10820 (LJC78_10820) - 2035082..2035315 (+) 234 WP_003231251.1 hypothetical protein -
  LJC78_RS10825 (LJC78_10825) yozO 2035409..2035753 (-) 345 WP_003220141.1 PH domain-containing protein -
  LJC78_RS10830 (LJC78_10830) yozC 2036109..2036312 (-) 204 WP_003231245.1 DUF6501 family protein -

Sequence

Protein


Download         Length: 591 a.a.        Molecular weight: 67373.82 Da        Isoelectric Point: 6.2902

>NTDB_id=539622 LJC78_RS10780 WP_014480018.1 2029961..2031736(-) (recQ) [Bacillus subtilis subsp. natto strain SCP010-1]
MLHRAQSLLAHYFGYEKFRSGQDEAIRLVTEARQNTACIMPTGGGKSICYQIPALMFEGTTIVISPLISLMKDQVDALEE
AGINAAYINSTQSNQEIYERLNGLKEGAYKLFYITPERLTSTEFIRILQGIDVPLVAIDEAHCISQWGHDFRPSYRNIEI
LFRELHDKPVIMALTATATPEVHDDICKQLHIQKENTVYTGFSRENLTFKVVKGENKDRFIDEYVQNNRHEAGIVYTATR
KEADRIYERLKRNQVRAGRYHGGMADDERKEQQERFLNDELQVMVATSAFGMGIDKSNIRFVLHAQIPKDMESYYQEAGR
AGRDGLASECVLLFSPQDIMVQRFLIEQSEHEEKQKQDLKKLRQMVDYCHTEDCLQRFILMYFGEKEPNACGQCGNCTDT
RAAHDVTREAQMVLSCIIRMKERFGKTMVAQVLAGSKNKKVLENGFSDLSTYGILKHQSVGEISDFIEFLISDDFIRMSD
GTFPTLFVSSKGRNVLKGELSVARKEALKAAAITENDELFERLRMVRKEIAADQGVPPFVVFSDQTLKEMSGKQPVNDDE
LLSIKGVGEQKRAKYGRLFLQEIQAYARMTD

Nucleotide


Download         Length: 1776 bp        

>NTDB_id=539622 LJC78_RS10780 WP_014480018.1 2029961..2031736(-) (recQ) [Bacillus subtilis subsp. natto strain SCP010-1]
ATGTTACATAGAGCCCAATCCCTTCTGGCTCATTATTTTGGTTATGAGAAGTTTCGGAGCGGCCAAGATGAAGCGATCCG
CTTGGTGACGGAAGCGAGGCAAAATACGGCCTGCATTATGCCGACGGGAGGCGGCAAATCGATTTGCTATCAAATTCCGG
CATTAATGTTTGAAGGGACGACGATCGTCATATCACCGTTGATTTCCTTGATGAAGGATCAAGTTGATGCGTTAGAAGAA
GCGGGGATTAACGCCGCCTACATTAACAGCACACAATCCAATCAGGAAATATATGAGAGGCTGAACGGACTCAAAGAAGG
GGCTTATAAGCTTTTTTACATTACACCAGAGCGACTAACGTCCACAGAGTTTATCCGGATTTTGCAGGGCATAGATGTTC
CTTTGGTCGCAATAGACGAGGCGCACTGTATTTCTCAATGGGGCCATGATTTCAGGCCAAGCTACAGGAATATTGAAATC
TTGTTCCGTGAATTACACGACAAGCCTGTTATCATGGCGTTAACAGCAACAGCCACACCCGAGGTTCATGATGATATTTG
CAAACAGCTGCATATTCAAAAAGAAAACACGGTATATACAGGATTTTCACGAGAGAATTTAACCTTTAAAGTAGTAAAAG
GAGAAAATAAAGATCGGTTTATAGACGAATATGTGCAAAACAACAGGCATGAAGCAGGAATTGTCTATACAGCGACCAGA
AAAGAAGCTGATCGGATATATGAGAGATTGAAACGAAATCAAGTCAGGGCAGGCCGGTATCATGGAGGTATGGCTGATGA
TGAGAGAAAAGAGCAGCAGGAAAGGTTTCTTAATGATGAGCTTCAAGTGATGGTGGCAACCTCTGCTTTTGGAATGGGTA
TTGATAAATCAAATATCAGATTTGTTCTGCATGCACAAATCCCGAAAGATATGGAAAGCTATTATCAAGAGGCAGGACGA
GCTGGACGGGACGGTCTTGCCAGTGAATGTGTTCTCCTGTTTTCACCGCAGGATATTATGGTGCAGCGTTTCTTAATTGA
GCAATCAGAACATGAAGAGAAACAAAAGCAGGATTTAAAAAAGCTGAGACAAATGGTCGACTACTGTCATACGGAAGATT
GTCTGCAGCGTTTTATCCTTATGTATTTCGGAGAAAAGGAGCCTAATGCGTGCGGACAGTGCGGAAACTGTACCGATACA
AGAGCGGCCCATGACGTGACGCGGGAGGCGCAAATGGTCTTATCTTGTATCATTCGCATGAAAGAACGGTTTGGCAAGAC
GATGGTTGCCCAGGTGCTTGCCGGCTCCAAAAATAAAAAAGTTCTTGAAAACGGCTTTTCAGACCTCTCAACATACGGGA
TATTAAAACACCAATCCGTTGGCGAAATCAGCGATTTTATCGAATTTCTTATTTCTGACGACTTCATCAGGATGTCAGAC
GGAACGTTTCCGACTCTTTTTGTCAGTAGTAAAGGAAGGAATGTGCTGAAAGGAGAATTATCAGTAGCGAGAAAAGAAGC
GTTAAAAGCGGCAGCGATTACTGAAAATGACGAGCTATTTGAACGATTGCGCATGGTTCGGAAAGAAATTGCGGCTGATC
AGGGTGTTCCGCCATTTGTTGTTTTCTCTGACCAAACGTTAAAAGAAATGTCAGGAAAACAGCCCGTAAATGATGATGAA
CTTTTGTCTATAAAAGGAGTCGGAGAACAAAAAAGAGCAAAATACGGCCGGCTTTTTTTACAAGAAATACAAGCTTATGC
AAGGATGACAGACTAA

Domains

Predicted by InterProScan.

RQC domain (RQC)

(403-507)

DEAD/DEAH box helicase (DEAD)

(21-182)

HRDC domain (HRDC)

(518-583)

Helicase conserved C-terminal domain (Helicase_C)

(218-324)

RecQ zinc-binding (RecQ_Zn_bind)

(336-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

99.154

100

0.992