Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   LJC78_RS09370 Genome accession   NZ_CP086007
Coordinates   1782960..1783391 (+) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis subsp. natto strain SCP010-1     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1777960..1788391
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJC78_RS09350 (LJC78_09350) spoVS 1778522..1778782 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  LJC78_RS09355 (LJC78_09355) tdh 1779047..1780090 (+) 1044 WP_014479818.1 L-threonine 3-dehydrogenase -
  LJC78_RS09360 (LJC78_09360) kbl 1780103..1781281 (+) 1179 WP_014479819.1 glycine C-acetyltransferase -
  LJC78_RS09365 (LJC78_09365) miaB 1781429..1782958 (+) 1530 WP_014479820.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  LJC78_RS09370 (LJC78_09370) ymcA 1782960..1783391 (+) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  LJC78_RS09375 (LJC78_09375) cotE 1783653..1784198 (+) 546 WP_003231833.1 outer spore coat protein CotE -
  LJC78_RS09380 (LJC78_09380) hexA 1784331..1786907 (+) 2577 WP_014479821.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=539616 LJC78_RS09370 WP_003231834.1 1782960..1783391(+) (ymcA) [Bacillus subtilis subsp. natto strain SCP010-1]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=539616 LJC78_RS09370 WP_003231834.1 1782960..1783391(+) (ymcA) [Bacillus subtilis subsp. natto strain SCP010-1]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCACGAAACCTTGCAAAAATGATTTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAGATGGAAGTAAATGACCTACTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1