Detailed information
Bioinformatically predicted
Overview
| Name | comGG | Type | Machinery gene |
| Locus tag | JRY11_RS04250 | Genome accession | NZ_CP070382 |
| Coordinates | 820745..821029 (+) | Length | 94 a.a. |
| NCBI ID | WP_025017139.1 | Uniprot ID | - |
| Organism | Lactococcus lactis strain KF140 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 821127..850607 | 820745..821029 | flank | 98 |
Gene organization within MGE regions
Location: 820745..850607
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JRY11_RS04250 (JRY11_000858) | comGG | 820745..821029 (+) | 285 | WP_025017139.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| JRY11_RS04255 (JRY11_000859) | - | 821127..821564 (+) | 438 | WP_003129992.1 | zinc-dependent MarR family transcriptional regulator | - |
| JRY11_RS04260 (JRY11_000860) | - | 821561..822403 (+) | 843 | WP_015427160.1 | metal ABC transporter substrate-binding protein | - |
| JRY11_RS04265 (JRY11_000861) | - | 822580..823317 (+) | 738 | WP_012898617.1 | metal ABC transporter ATP-binding protein | - |
| JRY11_RS04270 (JRY11_000862) | - | 823310..824119 (+) | 810 | WP_014570791.1 | metal ABC transporter permease | - |
| JRY11_RS04275 (JRY11_000863) | - | 824157..825023 (-) | 867 | WP_025017140.1 | RluA family pseudouridine synthase | - |
| JRY11_RS04280 (JRY11_000864) | - | 825228..825605 (+) | 378 | WP_003129983.1 | pyridoxamine 5'-phosphate oxidase family protein | - |
| JRY11_RS04285 (JRY11_000865) | - | 825719..826150 (+) | 432 | WP_010906308.1 | DUF3290 domain-containing protein | - |
| JRY11_RS04290 (JRY11_000866) | - | 826167..826802 (+) | 636 | WP_012898614.1 | DUF421 domain-containing protein | - |
| JRY11_RS04295 (JRY11_000867) | - | 827111..829342 (+) | 2232 | WP_023188588.1 | PBP1A family penicillin-binding protein | - |
| JRY11_RS04300 (JRY11_000868) | - | 829444..831261 (+) | 1818 | WP_023188589.1 | acyltransferase family protein | - |
| JRY11_RS04305 | rpmG | 831302..831451 (+) | 150 | WP_010906305.1 | 50S ribosomal protein L33 | - |
| JRY11_RS04310 (JRY11_000869) | secE | 831562..831756 (+) | 195 | WP_003129978.1 | preprotein translocase subunit SecE | - |
| JRY11_RS04315 (JRY11_000870) | nusG | 831955..832512 (+) | 558 | WP_003129977.1 | transcription termination/antitermination protein NusG | - |
| JRY11_RS04320 (JRY11_000871) | thrC | 832614..834104 (+) | 1491 | WP_023188591.1 | threonine synthase | - |
| JRY11_RS04325 (JRY11_000872) | - | 834101..835390 (+) | 1290 | WP_248554365.1 | MATE family efflux transporter | - |
| JRY11_RS04330 (JRY11_000873) | mscL | 835431..835799 (-) | 369 | WP_010906303.1 | large-conductance mechanosensitive channel protein MscL | - |
| JRY11_RS04335 (JRY11_000874) | rpsJ | 836112..836420 (+) | 309 | WP_003129973.1 | 30S ribosomal protein S10 | - |
| JRY11_RS04340 (JRY11_000875) | rplC | 836439..837062 (+) | 624 | WP_003129970.1 | 50S ribosomal protein L3 | - |
| JRY11_RS04345 (JRY11_000876) | rplD | 837088..837714 (+) | 627 | WP_003129968.1 | 50S ribosomal protein L4 | - |
| JRY11_RS04350 (JRY11_000877) | - | 837714..838007 (+) | 294 | WP_003129966.1 | 50S ribosomal protein L23 | - |
| JRY11_RS04355 (JRY11_000878) | rplB | 838023..838853 (+) | 831 | WP_003129965.1 | 50S ribosomal protein L2 | - |
| JRY11_RS04360 (JRY11_000879) | rpsS | 839013..839291 (+) | 279 | WP_003129963.1 | 30S ribosomal protein S19 | - |
| JRY11_RS04365 (JRY11_000880) | rplV | 839307..839654 (+) | 348 | WP_010906302.1 | 50S ribosomal protein L22 | - |
| JRY11_RS04370 (JRY11_000881) | rpsC | 839667..840320 (+) | 654 | WP_003129960.1 | 30S ribosomal protein S3 | - |
| JRY11_RS04375 (JRY11_000882) | rplP | 840324..840737 (+) | 414 | WP_003129958.1 | 50S ribosomal protein L16 | - |
| JRY11_RS04380 (JRY11_000883) | rpmC | 840737..840946 (+) | 210 | WP_003129957.1 | 50S ribosomal protein L29 | - |
| JRY11_RS04385 (JRY11_000884) | rpsQ | 840967..841227 (+) | 261 | WP_003129955.1 | 30S ribosomal protein S17 | - |
| JRY11_RS04390 (JRY11_000885) | rplN | 841250..841618 (+) | 369 | WP_003129953.1 | 50S ribosomal protein L14 | - |
| JRY11_RS04395 (JRY11_000886) | rplX | 841752..842057 (+) | 306 | WP_003129951.1 | 50S ribosomal protein L24 | - |
| JRY11_RS04400 (JRY11_000887) | rplE | 842077..842619 (+) | 543 | WP_003129948.1 | 50S ribosomal protein L5 | - |
| JRY11_RS04405 (JRY11_000888) | - | 842638..842823 (+) | 186 | WP_003129946.1 | type Z 30S ribosomal protein S14 | - |
| JRY11_RS04410 (JRY11_000889) | - | 842977..843612 (+) | 636 | WP_025016847.1 | DUF6287 domain-containing protein | - |
| JRY11_RS04415 (JRY11_000890) | rpsH | 843820..844218 (+) | 399 | WP_003129932.1 | 30S ribosomal protein S8 | - |
| JRY11_RS04420 (JRY11_000891) | rplF | 844435..844971 (+) | 537 | WP_003129925.1 | 50S ribosomal protein L6 | - |
| JRY11_RS04425 (JRY11_000892) | rplR | 845187..845534 (+) | 348 | WP_003129924.1 | 50S ribosomal protein L18 | - |
| JRY11_RS04430 (JRY11_000893) | rpsE | 845553..846059 (+) | 507 | WP_003129922.1 | 30S ribosomal protein S5 | - |
| JRY11_RS04435 (JRY11_000894) | rpmD | 846070..846249 (+) | 180 | WP_003129921.1 | 50S ribosomal protein L30 | - |
| JRY11_RS04440 (JRY11_000895) | rplO | 846523..846966 (+) | 444 | WP_003129920.1 | 50S ribosomal protein L15 | - |
| JRY11_RS04445 (JRY11_000896) | secY | 847044..848363 (+) | 1320 | WP_003129919.1 | preprotein translocase subunit SecY | - |
| JRY11_RS04450 (JRY11_000897) | - | 848503..849162 (+) | 660 | WP_195918794.1 | adenylate kinase | - |
| JRY11_RS04455 (JRY11_000898) | - | 849168..850607 (-) | 1440 | WP_032947216.1 | recombinase family protein | - |
Sequence
Protein
Download Length: 94 a.a. Molecular weight: 10813.05 Da Isoelectric Point: 5.0604
>NTDB_id=539596 JRY11_RS04250 WP_025017139.1 820745..821029(+) (comGG) [Lactococcus lactis strain KF140]
MFSMFLQFYLERQIDDARQLRSEKEQLTAELMVSVALKTDLKSQGQIHFDSGDLSYNLLTDSSASSKITDHSSDENTYQF
SIHLKDGTNFQIKK
MFSMFLQFYLERQIDDARQLRSEKEQLTAELMVSVALKTDLKSQGQIHFDSGDLSYNLLTDSSASSKITDHSSDENTYQF
SIHLKDGTNFQIKK
Nucleotide
Download Length: 285 bp
>NTDB_id=539596 JRY11_RS04250 WP_025017139.1 820745..821029(+) (comGG) [Lactococcus lactis strain KF140]
ATGTTTTCAATGTTTCTTCAGTTCTATTTGGAAAGGCAAATAGATGATGCTCGACAATTAAGAAGTGAAAAGGAGCAGTT
AACAGCTGAATTAATGGTGTCAGTAGCTTTAAAGACTGATTTAAAATCTCAAGGTCAAATTCATTTTGATTCAGGGGATT
TGTCCTACAATTTACTGACAGACTCGTCAGCTAGTTCAAAAATTACTGACCATTCAAGTGATGAAAATACCTATCAATTT
AGTATCCATCTAAAAGATGGCACAAACTTTCAAATAAAAAAATAA
ATGTTTTCAATGTTTCTTCAGTTCTATTTGGAAAGGCAAATAGATGATGCTCGACAATTAAGAAGTGAAAAGGAGCAGTT
AACAGCTGAATTAATGGTGTCAGTAGCTTTAAAGACTGATTTAAAATCTCAAGGTCAAATTCATTTTGATTCAGGGGATT
TGTCCTACAATTTACTGACAGACTCGTCAGCTAGTTCAAAAATTACTGACCATTCAAGTGATGAAAATACCTATCAATTT
AGTATCCATCTAAAAGATGGCACAAACTTTCAAATAAAAAAATAA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGG | Lactococcus lactis subsp. cremoris KW2 |
58.511 |
100 |
0.585 |