Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   JRY11_RS02510 Genome accession   NZ_CP070382
Coordinates   486538..487326 (-) Length   262 a.a.
NCBI ID   WP_003129722.1    Uniprot ID   -
Organism   Lactococcus lactis strain KF140     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 481538..492326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JRY11_RS02490 (JRY11_000503) gatB 481991..483424 (-) 1434 WP_057719791.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  JRY11_RS02495 (JRY11_000504) - 483464..484066 (-) 603 WP_057719792.1 NUDIX hydrolase -
  JRY11_RS02500 (JRY11_000505) gatA 484070..485530 (-) 1461 WP_057719793.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  JRY11_RS02505 (JRY11_000506) gatC 485530..485835 (-) 306 WP_010905163.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  JRY11_RS02510 (JRY11_000507) codY 486538..487326 (-) 789 WP_003129722.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  JRY11_RS02515 (JRY11_000508) - 487479..488693 (-) 1215 WP_057719794.1 pyridoxal phosphate-dependent aminotransferase -
  JRY11_RS02520 (JRY11_000509) - 488762..490345 (-) 1584 WP_248554324.1 glycosyltransferase -
  JRY11_RS02525 (JRY11_000510) - 490542..490781 (-) 240 WP_010905161.1 hypothetical protein -
  JRY11_RS02530 (JRY11_000511) - 490793..491002 (-) 210 WP_057719796.1 hypothetical protein -
  JRY11_RS02535 (JRY11_000512) - 491167..491958 (-) 792 WP_057719797.1 DNA/RNA non-specific endonuclease -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29128.46 Da        Isoelectric Point: 4.5254

>NTDB_id=539583 JRY11_RS02510 WP_003129722.1 486538..487326(-) (codY) [Lactococcus lactis strain KF140]
MATLLEKTRKITAILQDGVTDLQQELPYNSMTERLANVIDCNACVINTKGELLGYSLPYNTNNDRVDQFFYDRKLPDEYV
RAAVRIYDTMANVPVDRPLAIFPEESLGDFPKGVTTLAPIYGSGMRLGTFIMWREDGEFTDDDLVLVELATTVIGVQLSN
LKLEQMEENIRKDTMATMAVNTLSYSEMKAVKAIIEELDGEEGHVIASVIADKIGITRSVIVNALRKLESAGVIESRSLG
MKGTYLKVLNTGLFDKLAGRNF

Nucleotide


Download         Length: 789 bp        

>NTDB_id=539583 JRY11_RS02510 WP_003129722.1 486538..487326(-) (codY) [Lactococcus lactis strain KF140]
GTGGCTACATTACTTGAAAAAACACGTAAAATCACCGCGATTTTGCAAGATGGAGTGACCGATTTGCAACAAGAGTTGCC
ATATAACAGTATGACTGAACGCTTGGCAAACGTCATTGATTGCAATGCATGTGTGATTAATACGAAGGGCGAGTTGCTTG
GTTACTCATTGCCTTATAATACAAACAATGACCGTGTTGACCAATTTTTCTATGATCGTAAATTGCCTGATGAATATGTT
CGTGCGGCAGTACGTATCTACGATACAATGGCAAACGTTCCTGTTGACCGTCCATTAGCAATCTTTCCAGAAGAAAGCCT
TGGCGATTTTCCAAAAGGTGTGACAACTTTAGCACCTATTTATGGTTCTGGAATGCGTTTGGGAACATTTATCATGTGGC
GTGAAGACGGCGAATTCACTGATGATGATTTGGTCTTAGTTGAACTTGCAACAACAGTAATTGGTGTTCAACTCTCAAAT
CTTAAACTTGAACAAATGGAAGAAAATATCCGTAAAGACACCATGGCAACTATGGCTGTTAACACACTTTCATATTCAGA
AATGAAAGCTGTTAAAGCAATCATTGAAGAGCTTGATGGTGAAGAAGGGCATGTTATCGCTTCTGTCATTGCTGACAAGA
TTGGGATTACACGTTCAGTCATCGTTAACGCATTGCGTAAACTCGAATCTGCTGGTGTAATTGAATCACGTTCACTTGGT
ATGAAAGGAACTTATCTTAAAGTTCTTAATACTGGTTTATTTGATAAACTTGCAGGACGTAATTTCTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(201-258)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

100

100

1
  codY Bacillus subtilis subsp. subtilis str. 168

47.638

96.947

0.462