Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JVB21_RS09065 Genome accession   NZ_CP070381
Coordinates   1807326..1808687 (+) Length   453 a.a.
NCBI ID   WP_205271950.1    Uniprot ID   -
Organism   Lactococcus taiwanensis strain K_LL001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1802326..1813687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JVB21_RS09050 (JVB21_09050) - 1804430..1806298 (+) 1869 WP_205271948.1 heavy metal translocating P-type ATPase -
  JVB21_RS09055 (JVB21_09055) - 1806419..1806667 (+) 249 WP_205271949.1 hypothetical protein -
  JVB21_RS09060 (JVB21_09060) - 1806816..1807043 (+) 228 WP_200407565.1 heavy-metal-associated domain-containing protein -
  JVB21_RS09065 (JVB21_09065) radA 1807326..1808687 (+) 1362 WP_205271950.1 DNA repair protein RadA Machinery gene
  JVB21_RS09070 (JVB21_09070) - 1808882..1809961 (+) 1080 WP_205271951.1 PIN/TRAM domain-containing protein -
  JVB21_RS09075 (JVB21_09075) - 1810026..1810655 (+) 630 WP_205271952.1 pyridoxamine 5'-phosphate oxidase family protein -
  JVB21_RS09080 (JVB21_09080) - 1810775..1811137 (+) 363 WP_205271953.1 PadR family transcriptional regulator -
  JVB21_RS09085 (JVB21_09085) - 1811124..1811471 (+) 348 WP_205271954.1 DUF1048 domain-containing protein -
  JVB21_RS09090 (JVB21_09090) - 1811458..1811781 (+) 324 WP_205271955.1 DUF1048 domain-containing protein -
  JVB21_RS09095 (JVB21_09095) - 1811872..1812366 (-) 495 WP_205271956.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49788.18 Da        Isoelectric Point: 5.2941

>NTDB_id=539568 JVB21_RS09065 WP_205271950.1 1807326..1808687(+) (radA) [Lactococcus taiwanensis strain K_LL001]
MAKKKSSFVCQNCGYKSAKYLGRCPNCGEWSSFVEEVEVQEVKNQRVSMSGERSKPMKLDEVELFETPRVETDLDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLASRGRVMYVSGEESAQQIKLRAERLGDIDRDFYLYAETNMQSIRAEVE
RLKPNFLIIDSIQTIMTPEIQSTQGSVSQVREVTGELMQIAKTNDIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGER
NNTFRILRAVKNRFGSTNEIGIFEMQGHGLVEVTNPSEVFLEERLEGSTGSAIVCALEGTRPILVEIQALTTPTMFGNAK
RTTSGLDFNRVSLIMAVLEKRTGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAVASSYKELPTDARECFIGEIGLTGEIR
RVTRIEQRLNEAAKLGFKKVYAPKNSITGIAIPTSIEVIGVATLNECLKMVFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=539568 JVB21_RS09065 WP_205271950.1 1807326..1808687(+) (radA) [Lactococcus taiwanensis strain K_LL001]
ATGGCAAAGAAAAAATCATCCTTTGTTTGTCAAAATTGTGGCTATAAATCTGCTAAATATCTCGGGCGTTGTCCGAATTG
TGGAGAATGGTCCTCTTTTGTTGAAGAGGTCGAAGTTCAAGAGGTCAAGAATCAGCGGGTTTCAATGAGCGGTGAGCGTT
CAAAACCAATGAAACTAGATGAAGTAGAGCTCTTTGAAACGCCCCGAGTTGAGACCGATCTAGATGAGTTCAATCGAGTC
TTGGGAGGTGGGGTCGTTCCTGGCTCACTCGTCCTAATTGGTGGAGATCCGGGGATTGGAAAATCTACACTACTCTTACA
AGTTTCAACCCAACTTGCTTCTCGTGGTAGAGTAATGTATGTCAGTGGGGAAGAGTCTGCGCAACAAATCAAATTACGCG
CTGAACGTTTAGGAGATATTGACCGAGACTTTTATCTGTATGCCGAAACTAATATGCAATCCATAAGAGCAGAAGTCGAG
CGACTAAAACCCAACTTTTTGATTATTGATTCAATACAAACAATCATGACCCCAGAAATTCAATCTACCCAAGGCTCAGT
AAGTCAAGTGCGTGAAGTGACTGGTGAACTGATGCAAATTGCTAAAACTAACGATATTGCTACATTCATTGTTGGGCATG
TGACTAAAGAAGGCCAACTTGCTGGGCCACGGATGTTAGAACATATGGTGGATACGGTCCTCTATTTCGAAGGAGAACGC
AACAATACCTTTCGTATTCTGAGAGCTGTAAAGAATCGTTTTGGTTCTACGAATGAGATTGGTATTTTTGAAATGCAGGG
TCACGGTTTAGTTGAGGTGACGAATCCTTCTGAAGTTTTCCTAGAAGAACGACTCGAAGGCTCGACAGGTTCTGCTATTG
TCTGTGCTCTAGAAGGGACACGTCCAATTTTAGTAGAAATACAGGCGTTAACCACCCCCACTATGTTTGGCAATGCAAAA
CGAACCACCTCAGGACTTGATTTTAATCGAGTTAGTTTGATTATGGCCGTGCTTGAGAAGCGAACAGGGTTACTTTTACA
AAATCAGGATGCTTATCTCAAGTCAGCAGGGGGAGTTAAGCTAGATGAGCCTGCAATTGACTTGGCAGTTGCCGTCGCAG
TTGCGTCAAGCTACAAAGAATTACCCACGGATGCACGTGAGTGCTTTATTGGAGAGATTGGCCTCACAGGAGAAATCCGA
CGCGTTACACGTATTGAACAACGACTAAATGAAGCAGCCAAGCTAGGTTTTAAGAAGGTATATGCCCCTAAGAATTCCAT
TACAGGGATAGCTATTCCGACTTCCATTGAAGTAATTGGAGTAGCTACTCTCAACGAGTGTTTAAAAATGGTGTTTGGGT
AA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(78-218)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

81.015

100

0.81
  radA Streptococcus pneumoniae D39

81.015

100

0.81
  radA Streptococcus pneumoniae R6

81.015

100

0.81
  radA Streptococcus pneumoniae TIGR4

81.015

100

0.81
  radA Streptococcus mitis SK321

81.015

100

0.81
  radA Streptococcus mitis NCTC 12261

80.795

100

0.808
  radA Bacillus subtilis subsp. subtilis str. 168

62.582

100

0.631