Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | JVB21_RS05885 | Genome accession | NZ_CP070381 |
| Coordinates | 1175725..1177968 (-) | Length | 747 a.a. |
| NCBI ID | WP_205271650.1 | Uniprot ID | - |
| Organism | Lactococcus taiwanensis strain K_LL001 | ||
| Function | degradation of ComX (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1170725..1182968
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JVB21_RS05865 (JVB21_05865) | - | 1172591..1173046 (-) | 456 | WP_205271649.1 | RNA pyrophosphohydrolase | - |
| JVB21_RS05870 (JVB21_05870) | def | 1173206..1173841 (+) | 636 | WP_075524418.1 | peptide deformylase | - |
| JVB21_RS05875 (JVB21_05875) | gap | 1173993..1175006 (-) | 1014 | WP_075524417.1 | type I glyceraldehyde-3-phosphate dehydrogenase | - |
| JVB21_RS05880 (JVB21_05880) | - | 1175175..1175645 (+) | 471 | WP_075524416.1 | Rrf2 family transcriptional regulator | - |
| JVB21_RS05885 (JVB21_05885) | clpC | 1175725..1177968 (-) | 2244 | WP_205271650.1 | ATP-dependent Clp protease ATP-binding subunit | Regulator |
| JVB21_RS05890 (JVB21_05890) | rpoD | 1178260..1179387 (-) | 1128 | WP_369932325.1 | RNA polymerase sigma factor RpoD | - |
| JVB21_RS05895 (JVB21_05895) | dnaG | 1179701..1181584 (-) | 1884 | WP_205271651.1 | DNA primase | - |
Sequence
Protein
Download Length: 747 a.a. Molecular weight: 83288.07 Da Isoelectric Point: 4.7668
>NTDB_id=539546 JVB21_RS05885 WP_205271650.1 1175725..1177968(-) (clpC) [Lactococcus taiwanensis strain K_LL001]
MLCQNCNINEATIHLYTSLNGQKKQIDLCQNCYQIMKSGGQEALFGAGNASNGNTDEPFNPFNDIFSALHGQDFNGNANQ
TPPTQTGGRGPRGPQNPRAKQPKGMLEEFGINITESARRGEIDPVIGRDEEIKRFIEILNRRTKNNPVLIGEPGVGKTAV
VEGLAQKIVDGDVPQKLQNKEVIRLDVVSLVQGTGIRGQFEERMQKLMDEIRKRNDVIMFIDEIHEIVGAGSAGDGNMDA
GNILKPALARGELQLVGATTLNEYRIIEKDAALERRMQPVKVDEPSVEETITILRGIQPRYEDYHHVKYTDEAIEAAAHL
SNRYIQDRFLPDKAIDLLDESGSKKNLTLKFVDPEDINRRIAEAEKKKNEATQAEDFEKAAHFRDQISKLRELQNHEVSD
EESPVITEKDIEQIVEQKTQIPVGDLKEKEQTQLINLADDLKAHVIGQDEAVDKIAKAIRRSRVGLGKPNRPIGSFLFVG
PTGVGKTELAKQLAMELFGSSESMIRFDMSEYMEKHSVAKLIGAPPGYVGYEEAGQLTERVRRNPYSLILLDEIEKAHPD
VMHMFLQILEDGRLTDAQGRTVSFKDSLIIMTSNAGTGKVEASVGFGAAREGRTKSVLGQLGDFFSPEFMNRFDGIIEFS
ALSKENLLKIVDLMLGDVNQQIGRNEIHLEVTQAAKEKLVDLGYDPSMGARPLRRTIQEHIEDPIADFYIEHPEYKELVA
DVIDDKIVISNQAQETTETTDEEVPAE
MLCQNCNINEATIHLYTSLNGQKKQIDLCQNCYQIMKSGGQEALFGAGNASNGNTDEPFNPFNDIFSALHGQDFNGNANQ
TPPTQTGGRGPRGPQNPRAKQPKGMLEEFGINITESARRGEIDPVIGRDEEIKRFIEILNRRTKNNPVLIGEPGVGKTAV
VEGLAQKIVDGDVPQKLQNKEVIRLDVVSLVQGTGIRGQFEERMQKLMDEIRKRNDVIMFIDEIHEIVGAGSAGDGNMDA
GNILKPALARGELQLVGATTLNEYRIIEKDAALERRMQPVKVDEPSVEETITILRGIQPRYEDYHHVKYTDEAIEAAAHL
SNRYIQDRFLPDKAIDLLDESGSKKNLTLKFVDPEDINRRIAEAEKKKNEATQAEDFEKAAHFRDQISKLRELQNHEVSD
EESPVITEKDIEQIVEQKTQIPVGDLKEKEQTQLINLADDLKAHVIGQDEAVDKIAKAIRRSRVGLGKPNRPIGSFLFVG
PTGVGKTELAKQLAMELFGSSESMIRFDMSEYMEKHSVAKLIGAPPGYVGYEEAGQLTERVRRNPYSLILLDEIEKAHPD
VMHMFLQILEDGRLTDAQGRTVSFKDSLIIMTSNAGTGKVEASVGFGAAREGRTKSVLGQLGDFFSPEFMNRFDGIIEFS
ALSKENLLKIVDLMLGDVNQQIGRNEIHLEVTQAAKEKLVDLGYDPSMGARPLRRTIQEHIEDPIADFYIEHPEYKELVA
DVIDDKIVISNQAQETTETTDEEVPAE
Nucleotide
Download Length: 2244 bp
>NTDB_id=539546 JVB21_RS05885 WP_205271650.1 1175725..1177968(-) (clpC) [Lactococcus taiwanensis strain K_LL001]
ATGCTTTGTCAAAATTGTAATATTAATGAGGCGACGATTCACCTTTATACAAGTTTGAATGGTCAGAAAAAACAAATTGA
TCTTTGTCAAAATTGCTATCAAATTATGAAATCTGGTGGGCAAGAAGCGTTGTTTGGTGCAGGAAATGCTTCAAACGGTA
ATACTGACGAACCTTTCAACCCATTTAATGATATTTTCAGCGCCTTACATGGGCAAGATTTCAATGGAAATGCCAATCAA
ACGCCACCAACACAAACAGGTGGACGTGGTCCGCGCGGTCCGCAAAATCCTCGGGCAAAACAACCTAAAGGAATGTTAGA
AGAATTTGGAATTAACATTACAGAGTCAGCTCGTCGTGGTGAAATTGACCCGGTGATTGGTCGTGATGAAGAAATCAAAC
GGTTCATTGAGATTTTAAATCGTAGGACTAAGAATAATCCTGTGTTAATTGGTGAACCTGGTGTTGGTAAAACAGCAGTT
GTTGAAGGTTTAGCGCAAAAAATTGTGGACGGAGATGTGCCGCAAAAACTACAAAATAAAGAAGTGATTCGTCTTGATGT
TGTTTCTCTTGTTCAAGGAACAGGAATTCGGGGTCAATTTGAAGAACGAATGCAAAAATTAATGGATGAAATCAGAAAAC
GTAATGATGTGATTATGTTTATTGATGAAATCCATGAAATTGTTGGTGCTGGTTCTGCCGGTGATGGCAATATGGATGCG
GGAAATATCCTAAAACCTGCGCTTGCGCGTGGTGAGCTTCAATTGGTCGGAGCAACAACGCTCAATGAATATCGCATCAT
TGAAAAAGATGCTGCGCTTGAACGTCGGATGCAACCTGTCAAAGTTGATGAACCATCAGTTGAAGAAACGATTACGATTC
TTCGAGGGATTCAACCACGCTATGAAGATTATCATCACGTGAAATACACTGATGAGGCGATTGAAGCAGCTGCTCATTTG
TCAAATCGTTACATTCAAGATCGTTTCTTACCAGATAAAGCCATTGACCTTTTGGATGAGTCGGGTTCTAAGAAAAATCT
AACATTGAAATTTGTTGATCCTGAAGATATCAATCGTCGAATTGCAGAAGCAGAAAAGAAGAAAAATGAAGCGACTCAAG
CTGAAGATTTTGAAAAAGCCGCTCATTTCCGTGATCAAATCAGCAAACTCCGTGAATTGCAAAATCATGAGGTTTCAGAT
GAAGAAAGTCCAGTCATCACTGAGAAAGATATTGAGCAAATTGTGGAGCAAAAAACTCAAATTCCAGTTGGTGATTTGAA
AGAAAAAGAACAAACCCAATTGATTAATTTGGCTGATGATTTGAAAGCTCATGTGATTGGACAGGATGAAGCAGTGGATA
AGATTGCTAAAGCCATCCGTCGTTCTCGTGTGGGACTTGGTAAACCTAATCGTCCAATTGGTTCTTTCCTCTTTGTCGGA
CCTACTGGTGTTGGTAAAACTGAACTTGCTAAACAATTGGCGATGGAACTTTTTGGTTCAAGTGAAAGTATGATTCGTTT
TGACATGTCGGAATACATGGAAAAACATTCGGTGGCCAAATTGATTGGAGCCCCTCCAGGATATGTAGGTTATGAAGAAG
CGGGTCAATTGACTGAACGTGTTCGTCGTAATCCTTACAGTTTGATTTTATTAGATGAAATCGAAAAAGCACATCCGGAT
GTGATGCACATGTTCTTGCAAATTCTTGAAGATGGACGCCTGACAGATGCACAAGGACGGACCGTATCCTTTAAGGATAG
TTTGATTATTATGACCTCTAATGCCGGAACGGGTAAAGTTGAAGCTTCTGTCGGTTTTGGTGCTGCCCGTGAAGGACGAA
CTAAATCAGTGCTTGGTCAACTTGGTGATTTCTTTAGCCCTGAATTCATGAACCGTTTTGACGGAATTATTGAATTCTCT
GCATTGAGTAAAGAAAACTTACTTAAAATTGTTGATCTCATGCTGGGTGATGTCAACCAACAAATTGGACGTAATGAAAT
CCACTTGGAAGTCACTCAAGCTGCAAAAGAAAAATTAGTTGATTTAGGATATGACCCTTCAATGGGTGCGCGTCCACTGC
GTCGTACAATTCAAGAACATATTGAAGATCCAATTGCTGATTTTTATATTGAACATCCAGAATATAAAGAATTGGTCGCT
GATGTGATTGATGATAAAATCGTCATCTCCAATCAAGCGCAAGAAACGACAGAAACAACTGATGAAGAAGTCCCTGCCGA
GTAA
ATGCTTTGTCAAAATTGTAATATTAATGAGGCGACGATTCACCTTTATACAAGTTTGAATGGTCAGAAAAAACAAATTGA
TCTTTGTCAAAATTGCTATCAAATTATGAAATCTGGTGGGCAAGAAGCGTTGTTTGGTGCAGGAAATGCTTCAAACGGTA
ATACTGACGAACCTTTCAACCCATTTAATGATATTTTCAGCGCCTTACATGGGCAAGATTTCAATGGAAATGCCAATCAA
ACGCCACCAACACAAACAGGTGGACGTGGTCCGCGCGGTCCGCAAAATCCTCGGGCAAAACAACCTAAAGGAATGTTAGA
AGAATTTGGAATTAACATTACAGAGTCAGCTCGTCGTGGTGAAATTGACCCGGTGATTGGTCGTGATGAAGAAATCAAAC
GGTTCATTGAGATTTTAAATCGTAGGACTAAGAATAATCCTGTGTTAATTGGTGAACCTGGTGTTGGTAAAACAGCAGTT
GTTGAAGGTTTAGCGCAAAAAATTGTGGACGGAGATGTGCCGCAAAAACTACAAAATAAAGAAGTGATTCGTCTTGATGT
TGTTTCTCTTGTTCAAGGAACAGGAATTCGGGGTCAATTTGAAGAACGAATGCAAAAATTAATGGATGAAATCAGAAAAC
GTAATGATGTGATTATGTTTATTGATGAAATCCATGAAATTGTTGGTGCTGGTTCTGCCGGTGATGGCAATATGGATGCG
GGAAATATCCTAAAACCTGCGCTTGCGCGTGGTGAGCTTCAATTGGTCGGAGCAACAACGCTCAATGAATATCGCATCAT
TGAAAAAGATGCTGCGCTTGAACGTCGGATGCAACCTGTCAAAGTTGATGAACCATCAGTTGAAGAAACGATTACGATTC
TTCGAGGGATTCAACCACGCTATGAAGATTATCATCACGTGAAATACACTGATGAGGCGATTGAAGCAGCTGCTCATTTG
TCAAATCGTTACATTCAAGATCGTTTCTTACCAGATAAAGCCATTGACCTTTTGGATGAGTCGGGTTCTAAGAAAAATCT
AACATTGAAATTTGTTGATCCTGAAGATATCAATCGTCGAATTGCAGAAGCAGAAAAGAAGAAAAATGAAGCGACTCAAG
CTGAAGATTTTGAAAAAGCCGCTCATTTCCGTGATCAAATCAGCAAACTCCGTGAATTGCAAAATCATGAGGTTTCAGAT
GAAGAAAGTCCAGTCATCACTGAGAAAGATATTGAGCAAATTGTGGAGCAAAAAACTCAAATTCCAGTTGGTGATTTGAA
AGAAAAAGAACAAACCCAATTGATTAATTTGGCTGATGATTTGAAAGCTCATGTGATTGGACAGGATGAAGCAGTGGATA
AGATTGCTAAAGCCATCCGTCGTTCTCGTGTGGGACTTGGTAAACCTAATCGTCCAATTGGTTCTTTCCTCTTTGTCGGA
CCTACTGGTGTTGGTAAAACTGAACTTGCTAAACAATTGGCGATGGAACTTTTTGGTTCAAGTGAAAGTATGATTCGTTT
TGACATGTCGGAATACATGGAAAAACATTCGGTGGCCAAATTGATTGGAGCCCCTCCAGGATATGTAGGTTATGAAGAAG
CGGGTCAATTGACTGAACGTGTTCGTCGTAATCCTTACAGTTTGATTTTATTAGATGAAATCGAAAAAGCACATCCGGAT
GTGATGCACATGTTCTTGCAAATTCTTGAAGATGGACGCCTGACAGATGCACAAGGACGGACCGTATCCTTTAAGGATAG
TTTGATTATTATGACCTCTAATGCCGGAACGGGTAAAGTTGAAGCTTCTGTCGGTTTTGGTGCTGCCCGTGAAGGACGAA
CTAAATCAGTGCTTGGTCAACTTGGTGATTTCTTTAGCCCTGAATTCATGAACCGTTTTGACGGAATTATTGAATTCTCT
GCATTGAGTAAAGAAAACTTACTTAAAATTGTTGATCTCATGCTGGGTGATGTCAACCAACAAATTGGACGTAATGAAAT
CCACTTGGAAGTCACTCAAGCTGCAAAAGAAAAATTAGTTGATTTAGGATATGACCCTTCAATGGGTGCGCGTCCACTGC
GTCGTACAATTCAAGAACATATTGAAGATCCAATTGCTGATTTTTATATTGAACATCCAGAATATAAAGAATTGGTCGCT
GATGTGATTGATGATAAAATCGTCATCTCCAATCAAGCGCAAGAAACGACAGAAACAACTGATGAAGAAGTCCCTGCCGA
GTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Lactococcus lactis subsp. cremoris KW2 |
95.856 |
100 |
0.96 |
| clpE | Streptococcus mutans UA159 |
76.486 |
100 |
0.775 |
| clpE | Streptococcus pneumoniae Rx1 |
76.503 |
97.992 |
0.75 |
| clpE | Streptococcus pneumoniae D39 |
76.503 |
97.992 |
0.75 |
| clpE | Streptococcus pneumoniae R6 |
76.503 |
97.992 |
0.75 |
| clpE | Streptococcus pneumoniae TIGR4 |
76.503 |
97.992 |
0.75 |
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
51.976 |
88.086 |
0.458 |
| clpC | Streptococcus pneumoniae D39 |
46.955 |
83.534 |
0.392 |
| clpC | Streptococcus pneumoniae Rx1 |
46.955 |
83.534 |
0.392 |
| clpC | Streptococcus pneumoniae TIGR4 |
46.955 |
83.534 |
0.392 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
47.471 |
82.062 |
0.39 |
| clpC | Streptococcus thermophilus LMD-9 |
44.104 |
87.416 |
0.386 |
| clpC | Streptococcus thermophilus LMG 18311 |
43.951 |
87.416 |
0.384 |
| clpC | Streptococcus mutans UA159 |
45.793 |
82.731 |
0.379 |