Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   LK402_RS00890 Genome accession   NZ_CP085965
Coordinates   174569..175435 (-) Length   288 a.a.
NCBI ID   WP_002858085.1    Uniprot ID   -
Organism   Campylobacter jejuni strain FDAARGOS_1546     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 169569..180435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK402_RS00870 (LK402_00870) metF 171422..172270 (+) 849 WP_002859283.1 methylenetetrahydrofolate reductase [NAD(P)H] -
  LK402_RS00875 (LK402_00875) - 172292..172483 (-) 192 WP_002852856.1 membrane protein -
  LK402_RS00880 (LK402_00880) atpB 172480..173160 (-) 681 WP_002858390.1 F0F1 ATP synthase subunit A -
  LK402_RS00885 (LK402_00885) radA 173229..174569 (-) 1341 WP_002866213.1 DNA repair protein RadA Machinery gene
  LK402_RS00890 (LK402_00890) pilA 174569..175435 (-) 867 WP_002858085.1 signal recognition particle-docking protein FtsY Machinery gene
  LK402_RS00895 (LK402_00895) - 175435..175992 (-) 558 WP_002866214.1 TlpA family protein disulfide reductase -
  LK402_RS00900 (LK402_00900) - 176075..176701 (+) 627 WP_002860439.1 5-formyltetrahydrofolate cyclo-ligase -
  LK402_RS00905 (LK402_00905) rny 176622..178175 (+) 1554 WP_002853829.1 ribonuclease Y -
  LK402_RS00910 (LK402_00910) - 178184..178741 (+) 558 WP_002866215.1 DedA family protein -
  LK402_RS00915 (LK402_00915) - 178741..180000 (+) 1260 WP_002877089.1 ComEC/Rec2 family competence protein -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 32022.00 Da        Isoelectric Point: 5.5179

>NTDB_id=539508 LK402_RS00890 WP_002858085.1 174569..175435(-) (pilA) [Campylobacter jejuni strain FDAARGOS_1546]
MFNFFKKGLAKTLENIVGVKGENKKITKDLLEEILLEADVSYEIVEEIIYYLPPQNEVKKEDLKRVMGSYFLYEKKETNQ
EKPFVELILGVNGAGKTTSIAKLAYLYKNQNQKVILGACDTFRAGAIEQLKLWAQKVDVDIVLTAQGHDPSAVAFDTISK
AKAKDFDRVIIDTAGRLQNQKNLAHELEKIVRISNKALEGAPHRKILVLDGTQGNAGILQAKAFNELVKLDGVIITKLDG
TAKGGALFSIARELELPIFYVGVGEQMTDLQEFNASAYLDTLLDPIFE

Nucleotide


Download         Length: 867 bp        

>NTDB_id=539508 LK402_RS00890 WP_002858085.1 174569..175435(-) (pilA) [Campylobacter jejuni strain FDAARGOS_1546]
ATGTTTAATTTTTTTAAAAAAGGACTTGCAAAAACTCTTGAAAATATTGTTGGAGTTAAAGGAGAGAACAAAAAAATAAC
CAAAGATTTGCTTGAAGAAATTTTGCTTGAAGCAGATGTAAGTTATGAAATAGTTGAAGAGATAATTTATTATTTACCAC
CTCAAAATGAAGTAAAAAAAGAAGATTTAAAGCGTGTTATGGGTTCTTATTTTCTTTATGAAAAAAAAGAAACCAATCAA
GAAAAACCTTTTGTAGAGCTTATTTTAGGAGTAAATGGAGCAGGAAAAACAACAAGTATTGCCAAGCTTGCTTATTTATA
CAAAAACCAAAATCAAAAAGTGATTTTAGGGGCGTGTGATACTTTTAGAGCAGGTGCGATTGAGCAATTAAAACTTTGGG
CGCAAAAAGTGGATGTAGATATAGTTTTAACTGCACAAGGGCATGATCCTTCAGCGGTTGCTTTTGATACCATTTCTAAA
GCAAAAGCAAAGGATTTTGATAGAGTTATTATCGATACAGCAGGGCGTTTGCAAAATCAAAAAAATTTAGCTCATGAGCT
TGAAAAAATTGTAAGAATTTCAAACAAAGCTTTAGAAGGCGCACCCCATAGAAAAATTTTAGTTTTAGATGGAACACAGG
GAAATGCTGGAATTTTACAAGCTAAAGCTTTTAATGAGCTTGTAAAACTTGATGGTGTGATTATTACAAAGCTTGATGGG
ACAGCTAAAGGGGGTGCACTTTTTAGTATAGCAAGAGAGCTTGAGCTTCCTATTTTTTATGTAGGCGTGGGTGAGCAAAT
GACGGATTTACAAGAATTTAATGCAAGTGCTTACTTAGATACTTTATTAGATCCTATTTTTGAATAA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(84-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

41.584

100

0.437