Detailed information NTG0539494

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: LK401_RS07920
• Genome accession: NZ_CP085952
• Coordinates: 1541671..1543092 (-)
• Length: 473 a.a.
• NCBI ID: WP_005687198.1
• Uniprot ID: -
• Organism: Haemophilus influenzae strain FDAARGOS_1560
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1536671..1548092

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LK401_RS07900 (LK401_07900)	pstA	1537322..1538170 (+)	849	WP_005650601.1	phosphate ABC transporter permease PstA	-
LK401_RS07905 (LK401_07905)	pstB	1538180..1538947 (+)	768	WP_005650603.1	phosphate ABC transporter ATP-binding protein PstB	-
LK401_RS07910 (LK401_07910)	phoB	1539044..1539739 (+)	696	WP_005650606.1	phosphate regulon transcriptional regulator PhoB	-
LK401_RS07915 (LK401_07915)	phoR	1539736..1541013 (+)	1278	WP_005653955.1	phosphate regulon sensor histidine kinase PhoR	-
LK401_RS07920 (LK401_07920)	sbcB	1541671..1543092 (-)	1422	WP_005687198.1	exodeoxyribonuclease I	Machinery gene
LK401_RS07925 (LK401_07925)	-	1543105..1543980 (-)	876	WP_011272627.1	hypothetical protein	-
LK401_RS07930 (LK401_07930)	-	1543984..1544892 (-)	909	WP_011272628.1	DUF5655 domain-containing protein	-

Sequence

Protein

• Length: 473 a.a.
• Molecular weight: 54323.71 Da
• Isoelectric Point: 5.7258

>NTDB_id=539494 LK401_RS07920 WP_005687198.1 1541671..1543092(-) (sbcB) [Haemophilus influenzae strain FDAARGOS_1560]
MAKDFSFFIYDYESFGVNPATDRPAQFAGIRTDADFNIIGKPIMFYCKQTNDYLPAPEAVMVTGITPQECNEKGLSEPEF
AANILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWKNGNSRWDLLDLVRACYALRPEGINWAYDDDGMPSF
RLEKLTKANGIEHENAHDAMADVYATIAMAKLIKEKQPKLFQYFFENRGKKEIEKLVDTGAMTPLVHVSGMLGNYRGNCT
WVAPLAWHPTNQNALIVCDLTGDIDNLLAKSADELRTDLYTKKSKLEERGVSSVPLKLVHINKCPILAPAKTLLPETANR
LGIDRQLCLDNLAKLRASFDIREKVADIFNEERQFASNDNVETELYNGFFSNADKNNMAILRSLPAEKLSEHGLAFEDKR
ILELLFHYRARHFYKTLTRAEQIKWKKYRQNKLEKSAVEFESSLQRLAEEHSDNSEKLSLLQQVYEYGIKLLG

Nucleotide

• Length: 1422 bp

>NTDB_id=539494 LK401_RS07920 WP_005687198.1 1541671..1543092(-) (sbcB) [Haemophilus influenzae strain FDAARGOS_1560]
ATGGCAAAAGATTTCAGCTTTTTTATTTACGATTATGAAAGTTTTGGTGTAAATCCAGCAACAGATCGCCCTGCGCAATT
TGCGGGTATTCGTACAGATGCTGATTTTAATATCATTGGTAAACCAATAATGTTTTATTGTAAACAAACCAACGATTATT
TACCGGCTCCTGAAGCCGTAATGGTCACAGGAATTACGCCTCAAGAATGTAATGAAAAGGGGCTTTCAGAGCCTGAATTC
GCCGCAAATATCTTAGCAGAATTTTCCCAACCCAATACTTGTGTCATGGGTTATAACAATATTCGCTATGATGATGAAAT
GACGCGTTATACGTTTTATCGTAATTTTATTGATCCTTATGAATACAGCTGGAAAAATGGGAATTCACGCTGGGATTTGT
TAGATTTAGTGCGAGCCTGTTATGCCTTGCGTCCAGAAGGAATTAATTGGGCTTATGACGATGATGGAATGCCAAGTTTC
CGCTTAGAAAAACTCACTAAAGCAAATGGTATTGAGCATGAAAATGCTCACGATGCCATGGCGGATGTATATGCAACTAT
TGCTATGGCGAAATTAATTAAAGAAAAACAGCCTAAATTATTCCAATATTTCTTTGAAAATCGCGGTAAAAAAGAAATCG
AAAAATTAGTTGATACAGGCGCAATGACACCTTTAGTGCATGTTTCTGGAATGCTAGGGAATTATCGTGGAAATTGCACT
TGGGTTGCACCTTTAGCTTGGCATCCGACAAATCAAAATGCACTCATTGTTTGTGATTTAACTGGCGATATCGATAATTT
ATTAGCCAAAAGTGCGGATGAATTACGGACAGATTTATATACCAAAAAATCTAAATTAGAAGAAAGAGGAGTTTCATCTG
TTCCGTTAAAGCTTGTGCATATCAATAAATGTCCTATTTTAGCACCAGCTAAAACTTTGTTACCAGAAACAGCAAATCGA
TTGGGTATTGATCGACAATTATGCTTGGATAATCTTGCAAAATTACGAGCATCTTTTGATATTCGTGAAAAAGTGGCGGA
TATTTTTAATGAAGAACGTCAATTTGCATCGAATGATAATGTAGAAACTGAGTTATACAATGGCTTTTTTAGCAATGCTG
ATAAAAATAATATGGCTATTTTACGTAGTTTACCTGCAGAAAAATTATCTGAACATGGTTTAGCTTTTGAAGATAAACGT
ATCCTTGAATTATTATTCCATTATCGCGCTCGTCATTTTTATAAAACCCTCACACGCGCTGAACAAATTAAATGGAAAAA
ATACCGACAGAATAAACTTGAAAAAAGTGCGGTAGAGTTTGAATCAAGTTTACAACGTTTAGCTGAGGAACATTCAGATA
ATTCTGAAAAACTATCTTTGCTACAACAAGTATATGAATATGGTATAAAATTACTAGGTTAG

Domains

Predicted by InterProScan.

• Exonuclease C-terminal (ExoI_SH3) (208-468)

• Exonuclease (RNase_T) (9-188)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	55.15	98.52	0.543