Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   JWB56_RS18750 Genome accession   NZ_CP070362
Coordinates   3854252..3855070 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain AB5075-VUB     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3849252..3860070
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JWB56_RS18715 (JWB56_18460) - 3849834..3849964 (-) 131 Protein_3649 hypothetical protein -
  JWB56_RS18720 (JWB56_18465) rpoZ 3850003..3850281 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  JWB56_RS18725 (JWB56_18470) gmk 3850354..3850983 (-) 630 WP_000015937.1 guanylate kinase -
  JWB56_RS18730 (JWB56_18475) ispH 3851106..3852056 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  JWB56_RS18735 (JWB56_18480) fimU 3852226..3852699 (+) 474 WP_001214060.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  JWB56_RS18740 (JWB56_18485) pilV 3852693..3853253 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  JWB56_RS18745 (JWB56_18490) pilW 3853254..3854255 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  JWB56_RS18750 (JWB56_18495) pilX 3854252..3855070 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  JWB56_RS18755 (JWB56_18500) pilY1 3855082..3858936 (+) 3855 WP_000768943.1 vWA domain-containing protein Machinery gene
  JWB56_RS18760 (JWB56_18505) pilY2 3858947..3859429 (+) 483 WP_001046489.1 type IV pilin protein Machinery gene
  JWB56_RS18765 (JWB56_18510) pilE 3859426..3859851 (+) 426 WP_000788336.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=539467 JWB56_RS18750 WP_000149374.1 3854252..3855070(+) (pilX) [Acinetobacter baumannii strain AB5075-VUB]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=539467 JWB56_RS18750 WP_000149374.1 3854252..3855070(+) (pilX) [Acinetobacter baumannii strain AB5075-VUB]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAAGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACCAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993