Detailed information NTG0539461

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: LK401_RS02955
• Genome accession: NZ_CP085952
• Coordinates: 563264..564262 (+)
• Length: 332 a.a.
• NCBI ID: WP_005659739.1
• Uniprot ID: -
• Organism: Haemophilus influenzae strain FDAARGOS_1560
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 558264..569262

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LK401_RS02930 (LK401_02930)	rbsD	558422..558841 (+)	420	WP_005664526.1	D-ribose pyranase	-
LK401_RS02935 (LK401_02935)	rbsA	558855..560336 (+)	1482	WP_011272089.1	ribose ABC transporter ATP-binding protein RbsA	-
LK401_RS02940 (LK401_02940)	rbsC	560352..561320 (+)	969	WP_005664522.1	ribose ABC transporter permease	-
LK401_RS02945 (LK401_02945)	rbsB	561340..562218 (+)	879	WP_005639843.1	ribose ABC transporter substrate-binding protein RbsB	-
LK401_RS02950 (LK401_02950)	rbsK	562316..563236 (+)	921	WP_011272090.1	ribokinase	-
LK401_RS02955 (LK401_02955)	cytR	563264..564262 (+)	999	WP_005659739.1	substrate-binding domain-containing protein	Regulator
LK401_RS02960 (LK401_02960)	-	564368..564919 (+)	552	WP_005649445.1	TIGR00645 family protein	-
LK401_RS02965 (LK401_02965)	rraA	565059..565547 (-)	489	WP_005649446.1	ribonuclease E activity regulator RraA	-
LK401_RS02970 (LK401_02970)	menA	565599..566516 (-)	918	WP_032827535.1	1,4-dihydroxy-2-naphthoate octaprenyltransferase	-
LK401_RS02975 (LK401_02975)	tsaA	566578..567297 (+)	720	WP_011272092.1	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	-
LK401_RS02980 (LK401_02980)	tehA	567350..568294 (-)	945	WP_005659732.1	dicarboxylate transporter/tellurite-resistance protein TehA	-

Sequence

Protein

• Length: 332 a.a.
• Molecular weight: 36706.44 Da
• Isoelectric Point: 7.6368

>NTDB_id=539461 LK401_RS02955 WP_005659739.1 563264..564262(+) (cytR) [Haemophilus influenzae strain FDAARGOS_1560]
MATMKDIARLAQVSTSTVSHVINGSRFVSDEIREKVMRIVAELNYTPSAVARSLKVRETKTIGLLVTATNNPFFAEVMAG
VEQYCQKNQYNLIIATTGGDAKRLQQNLQTLMHKQVDGLLLMCGDSRFQADIELAISLPLVVMDWWFTELNADKILENSA
LGGYLATKALIDAGHRKIGIITGNLKKSVAQNRLQGYKNALSEAKIALNPHWIVESHFDFEGGVLGIQSLLTQSSRPTAV
FCCSDTIAVGAYQAIQQQGLRIPQDLSIMGYDDIELARYLSPPLSTICQPKAELGKLAVETLLQRIKNPNENYLTLVLEP
TCVLRESIYSFK

Nucleotide

• Length: 999 bp

>NTDB_id=539461 LK401_RS02955 WP_005659739.1 563264..564262(+) (cytR) [Haemophilus influenzae strain FDAARGOS_1560]
ATGGCGACAATGAAAGATATTGCACGACTGGCGCAAGTTTCGACTTCTACAGTTTCACATGTCATTAATGGATCGCGTTT
TGTTAGCGATGAAATTCGTGAGAAAGTGATGCGTATTGTCGCTGAACTGAATTACACCCCTTCAGCTGTTGCACGAAGCC
TTAAGGTGCGCGAAACCAAAACTATCGGGCTACTTGTCACCGCAACAAATAATCCCTTCTTTGCGGAAGTGATGGCTGGC
GTGGAGCAATATTGTCAGAAAAATCAATATAATCTTATTATTGCTACAACGGGTGGAGATGCCAAACGCCTACAACAAAA
TCTGCAAACTCTAATGCACAAACAAGTGGATGGTTTGCTTTTGATGTGTGGTGATAGCCGTTTTCAGGCTGATATAGAGT
TAGCCATTTCGCTGCCACTGGTTGTGATGGACTGGTGGTTTACTGAGTTAAATGCAGATAAAATACTCGAAAATTCAGCA
CTTGGTGGCTATTTGGCGACAAAAGCATTAATTGATGCAGGACATCGTAAAATTGGCATTATTACGGGAAATCTCAAAAA
ATCTGTCGCACAAAATCGTTTGCAAGGTTATAAAAATGCGCTGTCGGAAGCAAAAATTGCGTTAAATCCTCATTGGATTG
TCGAAAGTCATTTTGACTTTGAAGGCGGTGTACTTGGCATACAATCTTTACTTACTCAATCTTCACGTCCAACAGCAGTT
TTTTGTTGTAGTGACACCATTGCTGTCGGTGCATACCAAGCTATTCAGCAACAAGGCTTACGTATTCCGCAAGATCTTTC
AATTATGGGCTATGATGACATTGAATTGGCTCGTTATCTCTCGCCTCCTCTCTCCACCATTTGCCAACCGAAAGCTGAAC
TTGGCAAACTCGCTGTTGAAACACTATTGCAACGAATTAAAAATCCTAATGAAAATTACCTCACTTTGGTGTTAGAACCG
ACTTGTGTGTTAAGAGAGTCTATTTACAGTTTCAAATAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-327)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	36.89	98.795	0.364
cytR	Vibrio cholerae C6706	36.585	98.795	0.361