Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   LK401_RS01805 Genome accession   NZ_CP085952
Coordinates   355170..357362 (-) Length   730 a.a.
NCBI ID   WP_058222187.1    Uniprot ID   -
Organism   Haemophilus influenzae strain FDAARGOS_1560     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 350170..362362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK401_RS01780 (LK401_01780) relA 350464..352695 (+) 2232 WP_011271992.1 GTP diphosphokinase -
  LK401_RS01785 (LK401_01785) - 352710..353066 (+) 357 WP_005632174.1 diacylglycerol kinase -
  LK401_RS01790 (LK401_01790) mog 353149..353742 (+) 594 WP_005635167.1 molybdopterin adenylyltransferase -
  LK401_RS01795 (LK401_01795) glnB 353744..354082 (+) 339 WP_005649085.1 nitrogen regulatory protein P-II -
  LK401_RS01800 (LK401_01800) - 354082..355128 (+) 1047 WP_005649088.1 AI-2E family transporter -
  LK401_RS01805 (LK401_01805) priA 355170..357362 (-) 2193 WP_058222187.1 primosomal protein N' Machinery gene
  LK401_RS01810 (LK401_01810) trmB 357447..358187 (+) 741 WP_005666644.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  LK401_RS01815 (LK401_01815) - 358272..358616 (+) 345 WP_005632159.1 YggL family protein -
  LK401_RS01820 (LK401_01820) napF 358822..359352 (+) 531 WP_005666641.1 ferredoxin-type protein NapF -
  LK401_RS01825 (LK401_01825) - 359345..359626 (+) 282 WP_005656333.1 chaperone NapD -
  LK401_RS01830 (LK401_01830) napA 359663..362146 (+) 2484 WP_041174733.1 nitrate reductase catalytic subunit NapA -

Sequence

Protein


Download         Length: 730 a.a.        Molecular weight: 82181.37 Da        Isoelectric Point: 8.8562

>NTDB_id=539449 LK401_RS01805 WP_058222187.1 355170..357362(-) (priA) [Haemophilus influenzae strain FDAARGOS_1560]
MKIVRVALAVPLPRLFDYFVPDDVSLQIGMCVLVPFGTQKRVAIVADFPTKSDVPEDKLKAILQPLDLAPLFTPIYWDWL
HWAANYYQAGLGDVLFQALPVKLRNGESAVKNDRTFWRITDAGKNALEQGELKRSKKQAEALQCLSETDLEKGNNNFSSA
IWSALKAKGFIEEITIQTNPLSWQQRLGNNPIVNAENRLTLNKQQALAFSQLLFHSGFNVWLLDGVTGSGKTEIYLQYIE
EILKSGKQVLVLVPEIGLTPQTVQRFKARFNVEIDVLHSNLTDTQRLYVWDRARSGQSAIVIGTRSALFTQFSNLGAIIL
DEEHDSSYKQQDSWRYHARDLAIVLAQKLNIAVLMGSATPSLESINNVQNGKYQHLVLSKRAGNSTALRHFVIDLKNQNI
QNGLSKPLLERMKAHLEKGNQVLLFLNRRGFAPVLLCHECGWIAQCPHCEKPYTYHQHQNVLRCHHCGAQKTIPRQCGDC
GSTHLVTTGLGTEQLEETLKTLFPHYSVARIDRDSTARKGKLEGYLEDIQQGKSQILIGTQMLAKGHHFPNVTLVALVNV
DSALFSLDFRAEERLAQLYIQVAGRAGRADKQGEVVLQTHYPDHPLLTTLLANGYQAFAKETLQLRHSMGLPPFTFQALF
KAQARHSDLAENCLSQIADFFQSKQITGLQMLGPMPAPFSKKAGQYRWQLLLQHPSRMTLQKALREYQQAELEKNSLVRL
ILDVDPQDLS

Nucleotide


Download         Length: 2193 bp        

>NTDB_id=539449 LK401_RS01805 WP_058222187.1 355170..357362(-) (priA) [Haemophilus influenzae strain FDAARGOS_1560]
ATGAAAATTGTCCGAGTGGCACTGGCTGTGCCGCTTCCTCGCTTATTTGATTATTTCGTCCCCGATGATGTTTCATTACA
AATCGGTATGTGTGTTCTTGTGCCTTTTGGCACTCAAAAACGTGTCGCCATTGTGGCTGATTTTCCGACAAAATCGGACG
TGCCAGAGGATAAACTCAAGGCTATTCTTCAACCATTGGATTTAGCCCCACTTTTTACGCCCATTTATTGGGATTGGCTT
CACTGGGCAGCAAATTATTATCAAGCGGGATTAGGCGATGTGTTATTTCAAGCCTTGCCTGTGAAATTGCGTAACGGCGA
AAGTGCGGTAAAAAATGACCGCACTTTTTGGCGAATTACGGATGCGGGGAAAAATGCCCTTGAACAAGGCGAATTAAAAC
GCTCGAAAAAGCAAGCTGAAGCCCTACAATGCTTATCTGAAACTGATCTTGAAAAAGGCAATAATAATTTTTCCTCTGCC
ATTTGGTCTGCCTTAAAAGCCAAAGGGTTTATTGAAGAAATTACTATCCAAACAAATCCCCTAAGCTGGCAACAAAGATT
AGGCAATAACCCAATAGTCAATGCTGAAAATCGTTTAACCTTAAATAAGCAGCAAGCCTTAGCCTTCAGCCAACTGCTCT
TCCATTCTGGTTTCAATGTATGGCTGCTCGATGGCGTGACTGGTTCAGGTAAAACAGAAATTTATCTGCAGTATATTGAA
GAAATTTTAAAATCGGGTAAGCAAGTATTAGTGCTTGTACCCGAAATCGGGCTAACACCTCAAACGGTGCAACGTTTTAA
AGCACGTTTTAATGTAGAAATTGATGTACTGCATTCTAATTTAACCGATACGCAACGGCTTTATGTATGGGATCGCGCCC
GCTCTGGACAAAGTGCCATTGTGATTGGCACGAGATCGGCATTGTTCACGCAATTTTCTAATCTTGGTGCAATTATTTTG
GACGAGGAACACGATTCGTCTTACAAACAACAAGACAGTTGGCGTTACCATGCGCGAGACTTGGCGATTGTGCTGGCTCA
AAAACTAAATATTGCGGTATTAATGGGCTCCGCCACGCCAAGTTTAGAAAGTATTAATAATGTACAAAACGGCAAATACC
AACATTTAGTTTTATCAAAAAGAGCGGGAAATTCTACCGCACTTCGTCATTTCGTTATTGATTTGAAAAATCAAAATATA
CAAAACGGGTTATCAAAACCCTTGTTGGAACGAATGAAAGCCCATCTCGAAAAAGGCAATCAAGTGTTGCTTTTCTTAAA
TCGTCGTGGCTTTGCACCCGTATTGCTTTGCCATGAATGTGGTTGGATCGCACAATGCCCTCATTGTGAAAAACCTTATA
CCTATCATCAGCATCAAAATGTATTGCGTTGTCATCATTGTGGCGCACAAAAAACTATTCCTCGCCAATGTGGCGATTGC
GGTTCTACCCATTTAGTTACTACTGGTCTAGGCACAGAACAATTAGAAGAAACCTTGAAAACGCTATTTCCTCATTATTC
TGTAGCGCGAATCGACCGCGATAGCACGGCACGTAAAGGAAAATTGGAAGGTTATTTAGAAGATATTCAACAAGGCAAAA
GCCAAATTTTGATTGGCACACAAATGCTCGCGAAAGGACATCATTTTCCGAATGTTACTCTCGTTGCCTTAGTGAATGTA
GATAGTGCATTATTTTCACTGGATTTTCGTGCAGAAGAACGTTTAGCTCAACTTTATATTCAAGTTGCTGGACGTGCAGG
ACGTGCCGATAAACAAGGTGAAGTTGTGCTACAAACACATTATCCTGATCATCCTTTGCTTACCACTTTATTGGCAAATG
GCTACCAAGCTTTTGCAAAAGAAACCTTACAATTACGCCATTCAATGGGATTGCCGCCTTTTACTTTTCAGGCGTTATTC
AAAGCACAGGCTCGACATTCTGATCTTGCAGAAAATTGCTTAAGCCAAATTGCAGATTTTTTTCAATCGAAGCAAATTAC
GGGATTACAAATGCTTGGCCCAATGCCTGCACCGTTCAGCAAAAAAGCGGGGCAATATCGCTGGCAGTTATTATTGCAAC
ATCCGTCAAGAATGACGTTGCAAAAAGCATTAAGAGAATATCAACAAGCCGAACTTGAAAAAAACAGCCTAGTGCGGTTA
ATTTTGGACGTCGATCCGCAAGACTTATCATAA

Domains

Predicted by InterProScan.

PriA DNA helicase Cys-rich region (CRR) domain (Zn_ribbon_PriA)

(446-471)

Primosomal protein N C-terminal domain (PriA_C)

(633-726)

3DNA-binding domain (3BD) (PriA_3primeBD)

(5-100)

Helicase conserved C-terminal domain (Helicase_C)

(503-589)

DEAD/DEAH box helicase (DEAD)

(204-366)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

44.355

100

0.452