Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | JWB56_RS00340 | Genome accession | NZ_CP070362 |
| Coordinates | 62667..63020 (-) | Length | 117 a.a. |
| NCBI ID | WP_002014678.1 | Uniprot ID | A0A0D5YEH0 |
| Organism | Acinetobacter baumannii strain AB5075-VUB | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 60295..94433 | 62667..63020 | within | 0 |
Gene organization within MGE regions
Location: 60295..94433
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JWB56_RS00320 (JWB56_00320) | - | 60301..61368 (+) | 1068 | WP_000107855.1 | tyrosine-type recombinase/integrase | - |
| JWB56_RS00325 (JWB56_00325) | - | 61396..61692 (-) | 297 | WP_000218943.1 | hypothetical protein | - |
| JWB56_RS00330 (JWB56_00330) | - | 61689..61910 (-) | 222 | WP_000424605.1 | hypothetical protein | - |
| JWB56_RS00335 (JWB56_00335) | - | 61920..62657 (-) | 738 | WP_000125747.1 | 3'-5' exonuclease | - |
| JWB56_RS00340 (JWB56_00340) | ssb | 62667..63020 (-) | 354 | WP_002014678.1 | single-stranded DNA-binding protein | Machinery gene |
| JWB56_RS00345 (JWB56_00345) | - | 63008..63325 (-) | 318 | WP_000049658.1 | hypothetical protein | - |
| JWB56_RS00350 (JWB56_00350) | - | 63318..63488 (-) | 171 | WP_001015076.1 | hypothetical protein | - |
| JWB56_RS00355 (JWB56_00355) | - | 63478..64029 (-) | 552 | WP_001178668.1 | hypothetical protein | - |
| JWB56_RS00360 (JWB56_00360) | - | 64095..64427 (-) | 333 | WP_000632296.1 | hypothetical protein | - |
| JWB56_RS00365 (JWB56_00365) | - | 64424..67162 (-) | 2739 | WP_002014340.1 | toprim domain-containing protein | - |
| JWB56_RS00370 (JWB56_00370) | - | 67256..67447 (-) | 192 | WP_001043481.1 | hypothetical protein | - |
| JWB56_RS00375 (JWB56_00375) | - | 67540..67881 (+) | 342 | WP_000786719.1 | helix-turn-helix domain-containing protein | - |
| JWB56_RS00380 (JWB56_00380) | - | 67926..68141 (-) | 216 | WP_000556351.1 | hypothetical protein | - |
| JWB56_RS00385 (JWB56_00385) | - | 68266..69081 (-) | 816 | WP_001094886.1 | Rha family transcriptional regulator | - |
| JWB56_RS00390 (JWB56_00390) | - | 69189..69383 (-) | 195 | WP_000696053.1 | hypothetical protein | - |
| JWB56_RS00395 (JWB56_00395) | - | 69693..70571 (+) | 879 | WP_000417952.1 | BRCT domain-containing protein | - |
| JWB56_RS00400 (JWB56_00400) | - | 70571..70852 (+) | 282 | WP_000713873.1 | hypothetical protein | - |
| JWB56_RS00405 (JWB56_00405) | - | 71168..71368 (-) | 201 | WP_000130085.1 | TraR/DksA C4-type zinc finger protein | - |
| JWB56_RS00410 (JWB56_00410) | - | 71365..71604 (-) | 240 | WP_000113725.1 | ogr/Delta-like zinc finger family protein | - |
| JWB56_RS00415 (JWB56_00415) | - | 71734..73047 (-) | 1314 | WP_000483061.1 | contractile injection system protein, VgrG/Pvc8 family | - |
| JWB56_RS00420 (JWB56_00420) | - | 73048..73488 (-) | 441 | WP_000979757.1 | phage tail protein | - |
| JWB56_RS00425 (JWB56_00425) | - | 73494..75944 (-) | 2451 | WP_000774268.1 | phage tail tape measure protein | - |
| JWB56_RS00435 (JWB56_00435) | - | 77219..78040 (+) | 822 | WP_001046004.1 | OXA-23 family carbapenem-hydrolyzing class D beta-lactamase OXA-23 | - |
| JWB56_RS00440 (JWB56_00440) | - | 78145..78864 (-) | 720 | WP_100222614.1 | DUF815 domain-containing protein | - |
| JWB56_RS00445 (JWB56_00450) | - | 78900..79241 (-) | 342 | WP_001071615.1 | phage tail assembly protein | - |
| JWB56_RS00450 (JWB56_00455) | - | 79308..79826 (-) | 519 | WP_001207612.1 | phage major tail tube protein | - |
| JWB56_RS00455 (JWB56_00460) | - | 79839..81014 (-) | 1176 | WP_000963361.1 | phage tail sheath protein | - |
| JWB56_RS00460 (JWB56_00465) | - | 81164..83116 (-) | 1953 | WP_000729646.1 | phage tail protein | - |
| JWB56_RS00465 (JWB56_00470) | - | 83128..83733 (-) | 606 | WP_001050805.1 | phage tail protein I | - |
| JWB56_RS00470 (JWB56_00475) | - | 83733..84635 (-) | 903 | WP_000109738.1 | baseplate J/gp47 family protein | - |
| JWB56_RS00475 (JWB56_00480) | - | 84632..84979 (-) | 348 | WP_000987745.1 | GPW/gp25 family protein | - |
| JWB56_RS00480 (JWB56_00485) | - | 84976..85608 (-) | 633 | WP_000990625.1 | phage baseplate assembly protein V | - |
| JWB56_RS00485 (JWB56_00490) | - | 85681..86130 (-) | 450 | WP_001059843.1 | phage virion morphogenesis protein | - |
| JWB56_RS00490 (JWB56_00495) | - | 86127..86654 (-) | 528 | WP_000742888.1 | phage tail protein | - |
| JWB56_RS00495 (JWB56_00500) | - | 86651..87481 (-) | 831 | WP_000600982.1 | N-acetylmuramidase domain-containing protein | - |
| JWB56_RS00500 (JWB56_00505) | - | 87478..87747 (-) | 270 | WP_000571491.1 | phage holin family protein | - |
| JWB56_RS00505 (JWB56_00510) | - | 87744..88094 (-) | 351 | WP_001114936.1 | putative holin | - |
| JWB56_RS00510 (JWB56_00515) | - | 88103..88312 (-) | 210 | WP_000659474.1 | tail protein X | - |
| JWB56_RS00515 (JWB56_00520) | - | 88313..88765 (-) | 453 | WP_000015691.1 | head completion/stabilization protein | - |
| JWB56_RS00520 (JWB56_00525) | gpM | 88869..89615 (-) | 747 | WP_000950641.1 | phage terminase small subunit | - |
| JWB56_RS00525 (JWB56_00530) | - | 89626..90615 (-) | 990 | WP_001243259.1 | phage major capsid protein, P2 family | - |
| JWB56_RS00530 (JWB56_00535) | - | 90668..91495 (-) | 828 | WP_000748563.1 | GPO family capsid scaffolding protein | - |
| JWB56_RS00535 (JWB56_00540) | - | 91654..93441 (+) | 1788 | WP_031946558.1 | terminase large subunit domain-containing protein | - |
Sequence
Protein
Download Length: 117 a.a. Molecular weight: 13365.13 Da Isoelectric Point: 9.7939
>NTDB_id=539428 JWB56_RS00340 WP_002014678.1 62667..63020(-) (ssb) [Acinetobacter baumannii strain AB5075-VUB]
MRGINKVILVGMLGANPIPKQFQNGGSYAQFSIATSEKYQDKRTGDWIENTEWHRIVAHNRLGEIACQFLKKGSKVYIEG
SLHTRKWTDQNNQERYVTEVRAITFQSLDSLPQANPV
MRGINKVILVGMLGANPIPKQFQNGGSYAQFSIATSEKYQDKRTGDWIENTEWHRIVAHNRLGEIACQFLKKGSKVYIEG
SLHTRKWTDQNNQERYVTEVRAITFQSLDSLPQANPV
Nucleotide
Download Length: 354 bp
>NTDB_id=539428 JWB56_RS00340 WP_002014678.1 62667..63020(-) (ssb) [Acinetobacter baumannii strain AB5075-VUB]
ATGCGCGGAATAAATAAAGTGATCTTGGTTGGAATGCTTGGTGCTAACCCAATTCCTAAACAATTTCAAAACGGTGGCTC
CTATGCTCAGTTTTCAATTGCCACTTCAGAAAAATACCAGGACAAACGCACTGGAGATTGGATTGAAAATACTGAGTGGC
ATCGGATTGTGGCTCACAACCGCCTAGGTGAAATTGCCTGTCAATTTCTCAAAAAAGGTTCAAAAGTTTATATCGAAGGC
TCATTACATACCCGGAAATGGACTGACCAAAATAATCAAGAACGTTACGTAACTGAAGTTAGAGCCATTACATTTCAATC
GCTCGATAGCTTGCCACAAGCAAACCCGGTTTAA
ATGCGCGGAATAAATAAAGTGATCTTGGTTGGAATGCTTGGTGCTAACCCAATTCCTAAACAATTTCAAAACGGTGGCTC
CTATGCTCAGTTTTCAATTGCCACTTCAGAAAAATACCAGGACAAACGCACTGGAGATTGGATTGAAAATACTGAGTGGC
ATCGGATTGTGGCTCACAACCGCCTAGGTGAAATTGCCTGTCAATTTCTCAAAAAAGGTTCAAAAGTTTATATCGAAGGC
TCATTACATACCCGGAAATGGACTGACCAAAATAATCAAGAACGTTACGTAACTGAAGTTAGAGCCATTACATTTCAATC
GCTCGATAGCTTGCCACAAGCAAACCCGGTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
55.455 |
94.017 |
0.521 |
| ssb | Vibrio cholerae strain A1552 |
54.545 |
84.615 |
0.462 |
| ssb | Neisseria gonorrhoeae MS11 |
42.857 |
89.744 |
0.385 |
| ssb | Neisseria meningitidis MC58 |
42.857 |
89.744 |
0.385 |