Detailed information NTG0539428

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: LK431_RS06500
• Genome accession: NZ_CP085951
• Coordinates: 1315890..1317311 (+)
• Length: 473 a.a.
• NCBI ID: WP_111695567.1
• Uniprot ID: -
• Organism: Haemophilus influenzae strain FDAARGOS_1561
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1310890..1322311

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LK431_RS06490 (LK431_06490)	-	1314091..1314998 (+)	908	Protein_1245	DUF5655 domain-containing protein	-
LK431_RS06495 (LK431_06495)	-	1315002..1315877 (+)	876	WP_005670976.1	DMT family transporter	-
LK431_RS06500 (LK431_06500)	sbcB	1315890..1317311 (+)	1422	WP_111695567.1	exodeoxyribonuclease I	Machinery gene
LK431_RS06505 (LK431_06505)	phoR	1318109..1319374 (-)	1266	WP_050847119.1	phosphate regulon sensor histidine kinase PhoR	-
LK431_RS06510 (LK431_06510)	phoB	1319371..1320066 (-)	696	WP_021035191.1	phosphate regulon transcriptional regulator PhoB	-
LK431_RS06515 (LK431_06515)	pstB	1320143..1320910 (-)	768	WP_021035192.1	phosphate ABC transporter ATP-binding protein PstB	-
LK431_RS06520 (LK431_06520)	pstA	1320920..1321768 (-)	849	WP_021035193.1	phosphate ABC transporter permease PstA	-

Sequence

Protein

• Length: 473 a.a.
• Molecular weight: 54515.80 Da
• Isoelectric Point: 5.1963

>NTDB_id=539428 LK431_RS06500 WP_111695567.1 1315890..1317311(+) (sbcB) [Haemophilus influenzae strain FDAARGOS_1561]
MAKDFSFFIYDYESFGVNPATDRPAQFAGIRTDADFNIIGEPIMFYCKQTNDYLPAPEAVMVTGITPQECNEKGLSEPEF
AARILTEFSQPDTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWKNGNSRWDLLDLVRACYALRPEGINWAYDDDGMPSF
RLEKLTKANGIEHENAHDAMADVYATIAMAKLIKEKQPKLFQYFFENRGKKEIEKLVDTGAMTPLVHVSGMLGNYRGNCT
WVAPLAWHPTNQNALIVCDLTGDIDNLLAKSADELRADLYTKKLELEERGVSSIPLKLVHINKCPILAPAKTLLPETANR
LGIDRQLCLDNLAKLRASFDIREKVTDIFNEERQFESNDNVETELYNGFFSNADKNNMSILRSLPAEKLAEHGLAFEDKR
IPELLFHYRARHFYKTLTRAEQIKWQKYRQNKLEKSAVNFESSLQRLAEEHSDNHEKLSLLQQVYEYGIKLLG

Nucleotide

• Length: 1422 bp

>NTDB_id=539428 LK431_RS06500 WP_111695567.1 1315890..1317311(+) (sbcB) [Haemophilus influenzae strain FDAARGOS_1561]
ATGGCAAAAGATTTCAGCTTTTTTATTTACGATTATGAAAGTTTTGGTGTAAATCCCGCAACAGATCGTCCTGCGCAATT
TGCGGGTATTCGTACAGACGCTGATTTTAATATTATTGGCGAACCAATAATGTTTTATTGTAAACAAACCAACGATTATT
TACCGGCTCCTGAAGCGGTAATGGTAACAGGAATTACGCCACAAGAATGTAATGAAAAGGGGCTTTCAGAGCCTGAATTT
GCCGCAAGAATCTTGACAGAATTCTCACAGCCCGATACTTGCGTAATGGGTTATAACAACATTCGTTACGATGATGAAAT
GACGCGTTATACGTTTTATCGTAATTTTATTGATCCTTATGAATACAGTTGGAAAAACGGGAATTCACGCTGGGATTTGT
TAGATTTAGTACGAGCTTGTTATGCCTTGCGTCCAGAAGGGATTAATTGGGCTTATGACGATGATGGAATGCCAAGTTTC
CGCTTAGAAAAACTCACTAAAGCAAATGGTATTGAGCATGAAAATGCTCATGATGCAATGGCTGATGTATATGCAACTAT
TGCTATGGCGAAATTAATTAAAGAAAAACAGCCTAAATTATTCCAATATTTCTTTGAAAATCGCGGTAAAAAAGAAATCG
AAAAATTGGTTGATACAGGCGCAATGACACCTTTAGTGCATGTTTCTGGGATGTTAGGGAATTATCGTGGAAATTGCACT
TGGGTTGCCCCTTTAGCTTGGCATCCGACAAATCAAAATGCACTTATTGTTTGTGATTTAACTGGCGATATCGATAATTT
ATTAGCCAAAAGTGCGGATGAATTACGGGCAGATTTATATACCAAAAAATTGGAATTAGAAGAAAGGGGAGTTTCATCCA
TCCCATTAAAGCTTGTGCATATCAATAAATGTCCTATTTTAGCGCCAGCCAAAACCTTGTTGCCAGAAACAGCAAATCGC
TTGGGTATTGATCGTCAATTATGCTTGGATAATCTTGCAAAATTACGAGCATCTTTTGATATTCGTGAAAAAGTGACGGA
TATTTTTAATGAAGAACGTCAATTTGAATCAAATGATAATGTGGAAACTGAGCTATACAATGGCTTTTTCAGCAATGCTG
ATAAAAATAATATGTCTATTTTACGTAGTTTACCTGCGGAAAAATTAGCTGAACATGGTTTAGCTTTTGAAGATAAACGT
ATCCCTGAATTATTGTTCCATTATCGAGCTCGCCATTTTTATAAAACCCTTACACGCGCTGAACAAATTAAATGGCAGAA
ATATAGACAGAATAAACTTGAAAAAAGTGCGGTAAATTTTGAATCAAGTTTACAACGTTTAGCAGAGGAACATTCAGATA
ACCATGAAAAACTATCTTTACTGCAACAAGTATATGAATATGGTATAAAACTACTAGGCTAG

Domains

Predicted by InterProScan.

• Exonuclease C-terminal (ExoI_SH3) (208-468)

• Exonuclease (RNase_T) (9-188)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	55.15	98.52	0.543