Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   JWB57_RS15800 Genome accession   NZ_CP070358
Coordinates   3225105..3225419 (-) Length   104 a.a.
NCBI ID   WP_341849103.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain AB5075-VUB-itrA::ISAba13     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3220105..3230419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JWB57_RS15780 (JWB57_17760) - 3220205..3220834 (-) 630 WP_000219967.1 FHA domain-containing protein -
  JWB57_RS15785 (JWB57_17765) gspD 3220875..3223151 (-) 2277 WP_001196426.1 type II secretion system secretin GspD -
  JWB57_RS15790 (JWB57_17770) - 3223193..3224029 (-) 837 WP_000870031.1 type II secretion system protein N -
  JWB57_RS15795 (JWB57_17775) gspN 3224029..3224772 (-) 744 WP_000730342.1 type II secretion system protein N -
  JWB57_RS15800 (JWB57_17780) hns 3225105..3225419 (-) 315 WP_341849103.1 H-NS histone family protein Regulator
  JWB57_RS15805 (JWB57_17790) - 3225428..3225610 (-) 183 Protein_3092 H-NS histone family protein -
  JWB57_RS15810 (JWB57_17795) - 3225805..3226245 (-) 441 WP_000661569.1 thioesterase family protein -
  JWB57_RS15815 (JWB57_17800) - 3226253..3227446 (-) 1194 WP_000681771.1 hypothetical protein -
  JWB57_RS15820 (JWB57_17805) - 3227456..3228295 (-) 840 WP_001230201.1 hypothetical protein -
  JWB57_RS15825 (JWB57_17810) - 3228304..3229071 (-) 768 WP_000897420.1 uroporphyrinogen-III synthase -
  JWB57_RS15830 (JWB57_17815) hemC 3229076..3229993 (-) 918 WP_031944408.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 104 a.a.        Molecular weight: 12205.97 Da        Isoelectric Point: 9.6232

>NTDB_id=539403 JWB57_RS15800 WP_341849103.1 3225105..3225419(-) (hns) [Acinetobacter baumannii strain AB5075-VUB-itrA::ISAba13]
MLYYKFNFQVSTYLLMKPDIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAEETWT
GRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 315 bp        

>NTDB_id=539403 JWB57_RS15800 WP_341849103.1 3225105..3225419(-) (hns) [Acinetobacter baumannii strain AB5075-VUB-itrA::ISAba13]
ATGTTGTATTATAAATTTAATTTTCAGGTGTCGACTTATTTATTAATGAAACCGGATATTGCAAGCAAAAAAGATCAAGC
AATCGAAGATGCTTATAATCAAATTATCGAAATTGCTGAAAATGTAGGTTTTAGTGTTGAACAGCTTCTAGAATTTGGCG
CTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAAGAGACTTGGACT
GGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTTAATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(20-98)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

81.731

0.817