Detailed information NTG0539347

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: LK420_RS06675
• Genome accession: NZ_CP085949
• Coordinates: 1388198..1389202 (+)
• Length: 334 a.a.
• NCBI ID: WP_005688661.1
• Uniprot ID: -
• Organism: Haemophilus influenzae strain FDAARGOS_1562
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 1383198..1394202

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LK420_RS06650 (LK420_06650)	rbsD	1383356..1383775 (+)	420	WP_021034619.1	D-ribose pyranase	-
LK420_RS06655 (LK420_06655)	rbsA	1383789..1385270 (+)	1482	WP_021034618.1	ribose ABC transporter ATP-binding protein RbsA	-
LK420_RS06660 (LK420_06660)	rbsC	1385286..1386254 (+)	969	WP_041175266.1	ribose ABC transporter permease	-
LK420_RS06665 (LK420_06665)	rbsB	1386274..1387152 (+)	879	WP_021034616.1	ribose ABC transporter substrate-binding protein RbsB	-
LK420_RS06670 (LK420_06670)	rbsK	1387250..1388170 (+)	921	WP_021034615.1	ribokinase	-
LK420_RS06675 (LK420_06675)	cytR	1388198..1389202 (+)	1005	WP_005688661.1	substrate-binding domain-containing protein	Regulator
LK420_RS06680 (LK420_06680)	-	1389312..1389863 (+)	552	WP_005632696.1	TIGR00645 family protein	-
LK420_RS06685 (LK420_06685)	rraA	1389995..1390483 (-)	489	WP_021034614.1	ribonuclease E activity regulator RraA	-
LK420_RS06690 (LK420_06690)	menA	1390535..1391446 (-)	912	WP_021034613.1	1,4-dihydroxy-2-naphthoate octaprenyltransferase	-
LK420_RS06695 (LK420_06695)	tsaA	1391508..1392227 (+)	720	WP_021034612.1	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	-
LK420_RS06700 (LK420_06700)	tehA	1392280..1393224 (-)	945	WP_041175265.1	dicarboxylate transporter/tellurite-resistance protein TehA	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 36788.46 Da
• Isoelectric Point: 7.6607

>NTDB_id=539347 LK420_RS06675 WP_005688661.1 1388198..1389202(+) (cytR) [Haemophilus influenzae strain FDAARGOS_1562]
MATMKDIARLAQVSTSTVSHVINGSRFVSDEIREKVMRIVAELNYTPSAVARSLKVRETKTIGLLVTATNNPFFAEVMAG
VEQYCQQHQYNLIIATTGGDAKRLQQNLQTLMHKQVDGLLLMCGDSRFQADIELTISLPLVVMDWWFTELNADKILENSA
LGGYLATKALIDAGHRKIGIITGNLKKSVAQNRLQGYKNALSEAKIALNPHWIVESHFDFEGGVLGIQSLLTQSSRPTAV
FCCSDTIAVGAYQAIQQQGLRIPQDLSIMGYDDIELARYLSPPLSTICQPKAELGKLAVEALLQRIKNPNENYRTLVLEP
TCILRGSISTPSNI

Nucleotide

• Length: 1005 bp

>NTDB_id=539347 LK420_RS06675 WP_005688661.1 1388198..1389202(+) (cytR) [Haemophilus influenzae strain FDAARGOS_1562]
ATGGCGACAATGAAAGATATTGCACGACTGGCGCAAGTTTCGACTTCCACAGTTTCACATGTCATTAATGGATCGCGTTT
TGTTAGCGATGAAATTCGTGAGAAAGTGATGCGTATTGTCGCTGAACTGAATTACACCCCCTCAGCTGTTGCACGAAGTC
TTAAGGTGCGAGAAACCAAAACTATCGGGCTACTTGTCACCGCAACAAATAATCCATTCTTTGCGGAAGTGATGGCTGGC
GTGGAGCAATATTGTCAGCAGCATCAATATAATCTTATTATTGCCACCACTGGTGGCGATGCCAAACGCCTACAACAAAA
TCTGCAAACTCTAATGCACAAACAAGTGGATGGTTTGCTGTTGATGTGTGGTGATAGCCGTTTTCAGGCTGATATAGAGT
TAACCATTTCGCTGCCACTCGTTGTGATGGACTGGTGGTTTACTGAATTAAATGCAGATAAAATACTCGAAAATTCAGCA
CTTGGTGGCTATTTGGCGACAAAAGCATTAATTGATGCAGGACATCGTAAAATTGGCATTATTACGGGAAATCTCAAAAA
ATCTGTCGCACAAAATCGTTTGCAAGGTTATAAAAATGCGCTGTCGGAAGCAAAAATTGCGTTAAATCCTCATTGGATTG
TCGAAAGTCATTTTGACTTTGAAGGCGGTGTCCTTGGTATACAATCTTTACTTACTCAATCTTCACGTCCAACAGCAGTT
TTTTGTTGTAGTGACACCATTGCTGTTGGTGCATACCAAGCTATTCAGCAACAAGGCTTACGTATTCCGCAAGATCTTTC
AATTATGGGCTATGATGACATTGAATTGGCTCGTTATCTCTCACCTCCCCTTTCCACCATTTGCCAACCGAAAGCTGAAC
TTGGCAAACTTGCTGTAGAAGCACTATTGCAACGAATTAAAAATCCTAATGAAAATTACCGCACTTTAGTGTTAGAGCCG
ACCTGTATTTTGAGAGGATCAATTTCTACCCCTTCAAACATATAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-327)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	37.048	99.401	0.368
cytR	Vibrio cholerae C6706	36.228	100	0.362