Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JVX97_RS02685 Genome accession   NZ_CP070350
Coordinates   664104..665489 (-) Length   461 a.a.
NCBI ID   WP_120335682.1    Uniprot ID   A0A420FHL1
Organism   Sphingobacterium siyangense strain PDNC006     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 659104..670489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JVX97_RS02670 (JVX97_02670) nagB 659976..661904 (-) 1929 WP_120335684.1 glucosamine-6-phosphate deaminase -
  JVX97_RS02675 (JVX97_02675) - 662046..663194 (-) 1149 WP_120335683.1 methionine aminotransferase -
  JVX97_RS02680 (JVX97_02680) - 663267..663950 (+) 684 WP_205400208.1 peroxiredoxin family protein -
  JVX97_RS02685 (JVX97_02685) radA 664104..665489 (-) 1386 WP_120335682.1 DNA repair protein RadA Machinery gene
  JVX97_RS02690 (JVX97_02690) - 665728..666888 (-) 1161 WP_205400209.1 dipeptidase -
  JVX97_RS02695 (JVX97_02695) - 666885..668609 (-) 1725 WP_205400210.1 serine hydrolase domain-containing protein -
  JVX97_RS02700 (JVX97_02700) xseA 668806..670092 (+) 1287 WP_205400211.1 exodeoxyribonuclease VII large subunit -
  JVX97_RS02705 (JVX97_02705) xseB 670135..670356 (+) 222 WP_075990493.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 50538.91 Da        Isoelectric Point: 7.0182

>NTDB_id=539331 JVX97_RS02685 WP_120335682.1 664104..665489(-) (radA) [Sphingobacterium siyangense strain PDNC006]
MAKSKSAYFCQNCGYESPKWMGQCPSCKQWNSFVEEVVEKASSKVPEWRSSTTGGSTKRANKAAIIHEIVYQDELRILTP
DQEFNRVLGGGIVPGSLVLIGGEPGIGKSTLMLQLALSIPQVKTLYISGEESEQQIKMRAERLSQSSKANCYILTETSTQ
NIFKQIETVQPNVIVIDSIQTLHSAQIESAPGSVSQVRECTAELLRFAKETSTPVFIVGHITKDGSIAGPKVLEHMVDTV
LQFEGDRHHVYRILRAVKNRFGSASELGIYEMQGSGLREVSNPSEIMISQRDEPVSGVSIAAMLEGVRPMMIEVQALVSN
SAFGNAQRSSTGYDTKRLNMLLAVLEKRFGFRLSAQDVFLNIAGGLRVEDPAIDLAVVVAIISSQQDIAIRSNLTFAGEV
GLSGEIRAVNRIEQRIQEAEKLGFDGIFISKFNTKGLDAKKYNIAIRPVAKLEDIFSALFG

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=539331 JVX97_RS02685 WP_120335682.1 664104..665489(-) (radA) [Sphingobacterium siyangense strain PDNC006]
ATGGCAAAATCAAAATCAGCATACTTCTGTCAAAACTGTGGCTACGAATCTCCCAAATGGATGGGACAATGCCCTTCTTG
TAAGCAATGGAATAGTTTTGTTGAGGAAGTCGTCGAAAAGGCGAGTTCAAAAGTGCCCGAATGGCGTAGTTCTACCACAG
GCGGAAGCACGAAAAGAGCGAATAAAGCTGCGATCATCCACGAAATTGTCTATCAGGATGAATTACGGATATTGACTCCT
GATCAGGAGTTTAACCGGGTTCTTGGTGGTGGTATCGTTCCGGGGTCATTGGTACTTATCGGAGGCGAACCCGGTATTGG
GAAGTCTACGTTGATGTTACAGCTCGCTTTATCGATCCCACAAGTCAAGACACTTTATATTTCTGGGGAAGAAAGCGAAC
AGCAAATTAAGATGCGGGCAGAGCGATTGTCACAATCTTCTAAAGCAAATTGTTATATCCTTACCGAGACATCTACTCAA
AATATTTTCAAGCAGATCGAGACGGTACAACCTAATGTCATTGTAATAGATTCTATACAGACTTTACATTCCGCACAAAT
TGAATCGGCGCCAGGGTCGGTTTCTCAGGTACGCGAATGTACCGCAGAATTGCTGCGGTTTGCAAAGGAAACCAGTACAC
CAGTTTTTATTGTAGGGCATATTACCAAGGACGGATCTATTGCAGGCCCTAAGGTTTTAGAACATATGGTGGATACGGTG
CTTCAATTCGAGGGTGATCGTCATCATGTATACCGAATTTTACGGGCCGTAAAGAATCGTTTTGGATCTGCTTCAGAACT
GGGTATTTATGAAATGCAGGGGTCGGGATTGAGGGAAGTGTCAAATCCTTCGGAGATTATGATTTCCCAGCGCGATGAAC
CTGTTAGTGGCGTTTCCATTGCGGCGATGCTCGAAGGAGTGCGGCCTATGATGATTGAAGTACAGGCACTGGTGAGTAAC
TCGGCGTTTGGAAATGCCCAGCGCTCTTCTACAGGTTACGATACGAAGCGATTAAATATGCTGCTGGCTGTTTTGGAGAA
ACGTTTTGGTTTTAGGTTAAGTGCACAGGATGTATTTTTGAATATTGCCGGTGGGTTGCGTGTTGAAGATCCTGCAATCG
ATTTGGCTGTTGTTGTTGCAATTATTTCTTCACAACAAGATATTGCGATTCGATCCAATCTGACTTTTGCAGGTGAGGTT
GGTTTATCGGGTGAGATAAGGGCCGTAAATCGCATTGAACAGCGTATACAGGAGGCCGAGAAGTTGGGCTTTGATGGTAT
TTTTATTTCTAAATTCAATACCAAAGGATTGGATGCTAAAAAATATAATATTGCCATTCGTCCGGTTGCCAAATTGGAGG
ATATCTTCAGCGCTTTGTTTGGCTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(348-432)

AAA domain (AAA_25)

(75-225)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A420FHL1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae D39

52.495

100

0.525
  radA Streptococcus mitis NCTC 12261

52.495

100

0.525
  radA Streptococcus pneumoniae Rx1

52.495

100

0.525
  radA Streptococcus pneumoniae R6

52.495

100

0.525
  radA Streptococcus pneumoniae TIGR4

52.495

100

0.525
  radA Streptococcus mitis SK321

52.278

100

0.523
  radA Bacillus subtilis subsp. subtilis str. 168

53.95

96.095

0.518