Detailed information NTG0539325

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: LK420_RS02920
• Genome accession: NZ_CP085949
• Coordinates: 613380..614801 (-)
• Length: 473 a.a.
• NCBI ID: WP_021035189.1
• Uniprot ID: -
• Organism: Haemophilus influenzae strain FDAARGOS_1562
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 608380..619801

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LK420_RS02895 (LK420_02895)	pstA	608838..609686 (+)	849	WP_021035193.1	phosphate ABC transporter permease PstA	-
LK420_RS02900 (LK420_02900)	pstB	609696..610463 (+)	768	WP_021035192.1	phosphate ABC transporter ATP-binding protein PstB	-
LK420_RS02905 (LK420_02905)	phoB	610540..611235 (+)	696	WP_021035191.1	phosphate regulon transcriptional regulator PhoB	-
LK420_RS02910 (LK420_02910)	phoR	611232..612509 (+)	1278	WP_021035190.1	phosphate regulon sensor histidine kinase PhoR	-
LK420_RS02915 (LK420_02915)	-	612723..612926 (-)	204	WP_061725103.1	hypothetical protein	-
LK420_RS02920 (LK420_02920)	sbcB	613380..614801 (-)	1422	WP_021035189.1	exodeoxyribonuclease I	Machinery gene
LK420_RS02925 (LK420_02925)	-	614814..615689 (-)	876	WP_021035188.1	cell division protein MukB	-
LK420_RS02930 (LK420_02930)	-	615693..616601 (-)	909	WP_021035187.1	DUF5655 domain-containing protein	-

Sequence

Protein

• Length: 473 a.a.
• Molecular weight: 54353.74 Da
• Isoelectric Point: 5.5565

>NTDB_id=539325 LK420_RS02920 WP_021035189.1 613380..614801(-) (sbcB) [Haemophilus influenzae strain FDAARGOS_1562]
MAKDFSFFIYDYESFGVNPAIDRPAQFAGIRTDADFNIIGKPIMFYCKQTNDYLPAPEAVMVTGITPQECNEKGLSEPEF
AAKILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWKNGNSRWDLLDLVRACYALRPEGINWAYDDDGMPSF
RLEKLTKANGIEHENAHDAMADVYATIAMAKLIKEKQPKLFQYFFENRGKKEIEKLVDTGAMAPLVHVSGMLGNYRGNCT
WVAPLAWHPTNQNALIVCDLTGDIDNLLAKSADELRANLYTKKSELEERSVPPVPLKLVHINKCPILAPAKTLLPETANR
LGIDRQLCLDNLAKLRASFDIREKVTDIFNEERQFASNDNVETELYNGFFSNADKNNMSILRSLPAEKLSEHGLAFEDKR
IPELLFHYRARHFYKTLTRAEQIKWQKYRQNKLEKSAVDFESSLQRLAEEHSDNPEKLSLLQQVYEYGTKLLG

Nucleotide

• Length: 1422 bp

>NTDB_id=539325 LK420_RS02920 WP_021035189.1 613380..614801(-) (sbcB) [Haemophilus influenzae strain FDAARGOS_1562]
ATGGCAAAAGATTTCAGCTTTTTTATTTACGATTATGAAAGTTTTGGTGTAAATCCTGCAATAGATCGTCCTGCGCAATT
TGCGGGTATTCGTACGGATGCTGATTTTAATATCATTGGTAAACCAATAATGTTTTATTGTAAACAAACCAACGATTATT
TACCGGCTCCTGAAGCCGTAATGGTAACAGGAATTACGCCACAAGAATGTAATGAAAAGGGGCTTTCAGAGCCTGAATTT
GCCGCAAAAATTCTAGCTGAGTTTTCCCAACCCAATACTTGTGTCATGGGCTATAACAATATTCGCTACGATGATGAAAT
GACGCGTTATACGTTTTATCGTAATTTTATTGATCCTTACGAATACAGCTGGAAAAACGGGAATTCACGCTGGGATTTGT
TAGATTTAGTGCGAGCTTGTTATGCCTTGCGTCCAGAAGGGATTAATTGGGCTTATGACGATGATGGAATGCCAAGTTTC
CGCTTAGAAAAACTCACTAAAGCAAATGGTATTGAGCATGAAAATGCTCATGATGCAATGGCGGATGTATATGCAACTAT
TGCTATGGCGAAATTAATTAAAGAAAAACAGCCTAAATTATTCCAATATTTCTTTGAAAATCGCGGTAAAAAAGAAATCG
AAAAATTGGTTGATACAGGAGCAATGGCACCTTTAGTACATGTTTCTGGGATGTTAGGGAATTATCGTGGAAATTGCACT
TGGGTTGCCCCTTTAGCTTGGCATCCGACAAATCAAAATGCACTTATTGTTTGTGATTTAACTGGCGATATCGATAATTT
ATTAGCCAAAAGTGCGGATGAATTACGGGCGAATTTATATACAAAAAAATCAGAATTAGAAGAAAGGAGCGTTCCACCTG
TTCCATTAAAACTCGTACATATTAATAAATGCCCTATTTTAGCGCCAGCCAAAACCTTGTTGCCAGAAACAGCAAATCGC
TTGGGTATTGATCGTCAATTATGCTTGGATAATCTTGCAAAATTACGAGCATCTTTTGATATTCGTGAAAAAGTGACGGA
TATTTTTAATGAAGAACGTCAATTTGCATCGAATGATAATGTAGAAACTGAGCTATATAATGGCTTTTTCAGCAATGCTG
ATAAAAATAATATGTCTATTTTACGTAGTTTACCTGCAGAAAAATTATCTGAACATGGTTTAGCTTTTGAAGATAAACGT
ATCCCTGAATTATTGTTCCATTATCGAGCTCGCCATTTTTATAAAACCCTTACACGCGCTGAACAAATTAAATGGCAGAA
ATATAGACAGAATAAACTTGAAAAAAGTGCGGTAGATTTTGAATCAAGTTTACAACGTTTAGCAGAGGAACATTCAGATA
ATCCTGAAAAACTATCTTTGTTACAACAAGTATATGAATATGGTACAAAACTACTAGGTTAG

Domains

Predicted by InterProScan.

• Exonuclease (RNase_T) (9-188)

• Exonuclease C-terminal (ExoI_SH3) (208-469)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	55.579	98.52	0.548