Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   JVX94_RS14655 Genome accession   NZ_CP070345
Coordinates   2854544..2855656 (-) Length   370 a.a.
NCBI ID   WP_061406450.1    Uniprot ID   -
Organism   Bacillus sp. PDNC022     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2849544..2860656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JVX94_RS14640 (JVX94_14640) gyrA 2849570..2852074 (-) 2505 WP_095410045.1 DNA gyrase subunit A -
  JVX94_RS14645 (JVX94_14645) gyrB 2852307..2854223 (-) 1917 WP_048238341.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  JVX94_RS14650 (JVX94_14650) - 2854281..2854526 (-) 246 WP_056766786.1 extracellular matrix/biofilm biosynthesis regulator RemA family protein -
  JVX94_RS14655 (JVX94_14655) recF 2854544..2855656 (-) 1113 WP_061406450.1 DNA replication/repair protein RecF Machinery gene
  JVX94_RS14660 (JVX94_14660) yaaA 2855673..2855888 (-) 216 WP_048238335.1 S4 domain-containing protein YaaA -
  JVX94_RS14665 (JVX94_14665) dnaN 2856039..2857175 (-) 1137 WP_048238334.1 DNA polymerase III subunit beta -
  JVX94_RS14670 (JVX94_14670) dnaA 2857372..2858712 (-) 1341 WP_024424073.1 chromosomal replication initiator protein DnaA -
  JVX94_RS14675 (JVX94_14675) rpmH 2859333..2859467 (+) 135 WP_073208224.1 50S ribosomal protein L34 -
  JVX94_RS14680 (JVX94_14680) rnpA 2859546..2859905 (+) 360 WP_008360906.1 ribonuclease P protein component -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42545.61 Da        Isoelectric Point: 7.3662

>NTDB_id=539307 JVX94_RS14655 WP_061406450.1 2854544..2855656(-) (recF) [Bacillus sp. PDNC022]
MYIQSLALTSYRNYEHTELQFDNKVNVMIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDQDYAKIEGRVIKKNGP
LPMQLVISKKGKKGKVNHIEQQKLSHYVGALNTIMFAPEDLSLVKGSPQIRRRFLDMEIGQVSAVYLHDLSLYQKILSQR
NHYLKQLQTRKQTDQAMLEVLTEQLIDAAAKVVKRRLTFTKQLEKWAQPLHFGISRELETLTLQYQTAIEVSEASDLSKI
KNSYEESFQKLRDREIDRGVTLWGPHRDDLLFFVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVEGIDHATLKEAEIFRVASGKVID

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=539307 JVX94_RS14655 WP_061406450.1 2854544..2855656(-) (recF) [Bacillus sp. PDNC022]
ATGTACATTCAAAGTCTGGCGTTAACTTCATACCGAAATTATGAACACACCGAGCTTCAATTCGACAATAAGGTGAATGT
CATGATCGGTGAGAATGCCCAAGGTAAAACGAACTTGATGGAAGCGATCTATGTATTGTCGATGGCAAAGTCTCATCGTA
CGTCAAATGATAAAGAACTTATCCGATGGGACCAAGACTATGCTAAAATAGAAGGTAGAGTCATTAAAAAAAATGGTCCA
CTCCCAATGCAGCTCGTGATTTCAAAAAAAGGGAAAAAGGGCAAGGTCAATCACATTGAACAACAGAAGCTCAGTCATTA
TGTTGGTGCGTTAAACACCATCATGTTTGCGCCAGAGGACTTAAGTCTTGTGAAGGGCAGCCCGCAAATCCGCAGAAGAT
TCCTCGACATGGAGATTGGACAAGTTTCTGCTGTCTACTTGCATGATTTATCGCTCTATCAAAAAATCCTCTCTCAGCGG
AATCATTACTTGAAACAATTGCAGACAAGAAAGCAAACAGATCAAGCGATGCTGGAGGTTTTAACAGAGCAGTTGATTGA
TGCGGCAGCGAAAGTTGTCAAAAGACGACTGACTTTTACGAAACAGCTCGAAAAATGGGCCCAGCCGCTGCATTTTGGGA
TTTCTAGAGAGCTAGAAACACTCACGCTCCAATACCAGACGGCAATAGAGGTATCAGAAGCGTCAGACTTGTCGAAAATA
AAGAATAGCTATGAAGAATCGTTTCAGAAACTAAGAGACAGAGAAATAGACCGAGGGGTGACACTGTGGGGACCTCACAG
AGATGACCTGCTTTTCTTTGTGAATGGTCGGGATGTTCAGACATATGGCTCTCAAGGGCAGCAAAGAACAACAGCTCTTT
CACTAAAGCTGGCAGAAATTGATCTGATACATGAAGAAATCGGAGAATATCCCATTCTTCTACTTGATGATGTGTTATCT
GAACTTGATGATTACAGACAGTCTCATTTGCTCCATACCATTCAAGGTCGTGTACAGACCTTCGTCACTACAACAAGTGT
TGAAGGCATTGATCACGCCACCCTGAAAGAAGCGGAAATTTTCAGAGTAGCCAGTGGAAAAGTAATTGACTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

83.74

99.73

0.835