Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   JVX94_RS14420 Genome accession   NZ_CP070345
Coordinates   2811156..2811446 (+) Length   96 a.a.
NCBI ID   WP_087975202.1    Uniprot ID   -
Organism   Bacillus sp. PDNC022     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2806156..2816446
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JVX94_RS14405 (JVX94_14405) - 2806340..2807542 (-) 1203 WP_205183551.1 G5 and 3D domain-containing protein -
  JVX94_RS14410 (JVX94_14410) - 2807787..2808554 (-) 768 WP_048239541.1 TatD family hydrolase -
  JVX94_RS14415 (JVX94_14415) metG 2808635..2810635 (-) 2001 WP_205183554.1 methionine--tRNA ligase -
  JVX94_RS14420 (JVX94_14420) abrB 2811156..2811446 (+) 291 WP_087975202.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  JVX94_RS14425 (JVX94_14425) rsmI 2811491..2812372 (-) 882 WP_197197484.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  JVX94_RS14430 (JVX94_14430) - 2812347..2812646 (-) 300 WP_041105706.1 GIY-YIG nuclease family protein -
  JVX94_RS14435 (JVX94_14435) - 2812633..2813376 (-) 744 WP_205183557.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  JVX94_RS14440 (JVX94_14440) yabA 2813432..2813785 (-) 354 WP_024425629.1 DNA replication initiation control protein YabA -
  JVX94_RS14445 (JVX94_14445) - 2813800..2814627 (-) 828 WP_024425628.1 stage 0 sporulation family protein -
  JVX94_RS14450 (JVX94_14450) holB 2814630..2815619 (-) 990 WP_024425627.1 DNA polymerase III subunit delta' -
  JVX94_RS14455 (JVX94_14455) - 2815631..2816071 (-) 441 WP_205183560.1 YaaR family protein -
  JVX94_RS14460 (JVX94_14460) - 2816084..2816413 (-) 330 WP_024425625.1 cyclic-di-AMP receptor -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10853.65 Da        Isoelectric Point: 7.9655

>NTDB_id=539305 JVX94_RS14420 WP_087975202.1 2811156..2811446(+) (abrB) [Bacillus sp. PDNC022]
MKMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLANGKLVLSREG
AEQIINEIQNQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=539305 JVX94_RS14420 WP_087975202.1 2811156..2811446(+) (abrB) [Bacillus sp. PDNC022]
ATGAAGATGAAATCTACAGGTATTGTACGTAAAGTTGACGAATTAGGACGCGTGGTGATTCCAATCGAACTTCGCCGTAC
GCTAGGAATCGCTGAAAAAGACGCTTTGGAAATTTATGTTGATGATGAAAAAATTATCCTAAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACAGGTGAAGTATCAGACGATAACCTTAAACTTGCTAATGGTAAATTAGTTCTTAGCCGTGAAGGT
GCAGAGCAAATCATTAACGAAATCCAAAACCAACTTCAATCACAAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)

AbrB C-terminal domain (AbrB_C)

(55-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

93.75

100

0.938