Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   JVX94_RS12665 Genome accession   NZ_CP070345
Coordinates   2484615..2485043 (+) Length   142 a.a.
NCBI ID   WP_144472865.1    Uniprot ID   -
Organism   Bacillus sp. PDNC022     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2479615..2490043
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JVX94_RS12655 (JVX94_12655) - 2480200..2482188 (-) 1989 WP_205183351.1 hydantoinase B/oxoprolinase family protein -
  JVX94_RS12660 (JVX94_12660) - 2482178..2484247 (-) 2070 WP_205183353.1 hydantoinase/oxoprolinase family protein -
  JVX94_RS12665 (JVX94_12665) nucA/comI 2484615..2485043 (+) 429 WP_144472865.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  JVX94_RS12670 (JVX94_12670) - 2485171..2486868 (+) 1698 WP_205183355.1 methyl-accepting chemotaxis protein -
  JVX94_RS12675 (JVX94_12675) - 2486989..2487375 (+) 387 WP_205183358.1 competence protein ComJ -
  JVX94_RS12680 (JVX94_12680) - 2487377..2488183 (-) 807 WP_205183361.1 AAC(3) family N-acetyltransferase -
  JVX94_RS12685 (JVX94_12685) - 2488213..2488629 (-) 417 WP_048238129.1 Lrp/AsnC family transcriptional regulator -
  JVX94_RS12690 (JVX94_12690) - 2488745..2489509 (+) 765 WP_205183363.1 MBL fold metallo-hydrolase -
  JVX94_RS12695 (JVX94_12695) - 2489554..2489883 (-) 330 WP_197198033.1 YckD family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15856.81 Da        Isoelectric Point: 5.9135

>NTDB_id=539302 JVX94_RS12665 WP_144472865.1 2484615..2485043(+) (nucA/comI) [Bacillus sp. PDNC022]
MKLLKIILLLLLIVIGVATGYIKLEQGKQETANSSYDKTIHFPSDRYPETAKHIEEAIDEGHSSICTIDRKHSDEQRDQS
LHGVPTKRGYDRDEWPMAMCKEGGTGASVKYVSPSDNRGAGSWVSHQLSDDPDGTRIQFIID

Nucleotide


Download         Length: 429 bp        

>NTDB_id=539302 JVX94_RS12665 WP_144472865.1 2484615..2485043(+) (nucA/comI) [Bacillus sp. PDNC022]
ATGAAACTTCTTAAAATCATTCTCTTGCTTTTATTAATTGTCATTGGTGTAGCAACAGGCTATATCAAGCTGGAGCAAGG
GAAACAAGAGACAGCGAATTCATCTTATGACAAAACCATTCACTTTCCATCAGATCGCTATCCCGAAACAGCCAAGCACA
TAGAAGAAGCCATTGATGAAGGTCATTCGTCCATTTGCACAATTGATCGTAAACATAGCGATGAGCAGAGAGATCAATCA
TTACATGGCGTTCCAACAAAGCGCGGGTATGATCGGGACGAATGGCCAATGGCGATGTGTAAAGAAGGGGGCACAGGAGC
TTCTGTCAAATATGTAAGCCCTTCAGATAATAGAGGCGCAGGCTCGTGGGTAAGTCATCAACTATCAGATGATCCTGACG
GCACAAGAATTCAATTTATCATCGATTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(46-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

71.698

74.648

0.535