Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   JVX94_RS09370 Genome accession   NZ_CP070345
Coordinates   1793601..1794179 (-) Length   192 a.a.
NCBI ID   WP_024425481.1    Uniprot ID   A0A1L6ZJL9
Organism   Bacillus sp. PDNC022     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1788601..1799179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JVX94_RS09350 (JVX94_09350) - 1789671..1789949 (-) 279 WP_111290257.1 barstar family protein -
  JVX94_RS09355 (JVX94_09355) - 1790015..1791184 (-) 1170 WP_205185395.1 MFS transporter -
  JVX94_RS09360 (JVX94_09360) - 1791330..1792769 (+) 1440 WP_205185398.1 PLP-dependent aminotransferase family protein -
  JVX94_RS09365 (JVX94_09365) - 1792801..1793283 (-) 483 WP_111290187.1 hypothetical protein -
  JVX94_RS09370 (JVX94_09370) comK 1793601..1794179 (-) 579 WP_024425481.1 competence protein ComK Regulator
  JVX94_RS09375 (JVX94_09375) - 1794469..1794705 (+) 237 WP_095408140.1 IDEAL domain-containing protein -
  JVX94_RS09380 (JVX94_09380) - 1794762..1795622 (-) 861 WP_024425480.1 SDR family oxidoreductase -
  JVX94_RS09385 (JVX94_09385) - 1795764..1797296 (+) 1533 WP_205185401.1 FAD-dependent oxidoreductase -
  JVX94_RS09390 (JVX94_09390) - 1797388..1798683 (+) 1296 WP_144470083.1 globin-coupled sensor protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22350.37 Da        Isoelectric Point: 8.7996

>NTDB_id=539296 JVX94_RS09370 WP_024425481.1 1793601..1794179(-) (comK) [Bacillus sp. PDNC022]
MSGISETPLDSYVINQTTMAVLPVEEGKRVYSKVIERETSFYVELKPLQIIERSCRFFGSSYAGRKAGTYEVTGISHKPP
IVIDSSNHLYFFPTYSSNRPQCGWISHKYIHTFQESSLGDTVVTFTNEQTVKLDVSYKSFESQVHRTAYLRTKFQDRLDG
GLPKKQEFMLYPKEQQLNLVYDFILRELRNRY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=539296 JVX94_RS09370 WP_024425481.1 1793601..1794179(-) (comK) [Bacillus sp. PDNC022]
GTGTCAGGAATTAGTGAAACACCTTTAGATTCATACGTCATTAATCAAACAACAATGGCGGTCCTTCCAGTTGAAGAAGG
AAAAAGAGTATATTCAAAAGTCATAGAAAGAGAGACAAGCTTTTACGTTGAATTAAAACCCCTGCAAATTATTGAACGCA
GCTGCAGATTCTTCGGCTCAAGCTATGCAGGCAGAAAGGCGGGAACATATGAAGTAACAGGAATTTCTCACAAACCTCCA
ATTGTGATTGACTCATCCAATCATCTGTATTTCTTCCCAACTTATTCATCCAACCGTCCTCAGTGCGGCTGGATCTCCCA
CAAATACATTCATACCTTCCAAGAATCATCCCTCGGAGACACGGTGGTTACCTTTACAAATGAGCAAACCGTCAAACTTG
ATGTCTCATATAAATCATTTGAGAGTCAGGTGCACCGAACAGCATATCTCCGAACGAAATTTCAAGATCGTCTGGATGGA
GGTCTTCCTAAGAAACAAGAATTTATGCTGTATCCAAAGGAACAGCAGCTCAATCTCGTATACGATTTTATATTAAGAGA
GCTTCGCAATAGATATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1L6ZJL9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

61.979

100

0.62