Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | LK447_RS04210 | Genome accession | NZ_CP085947 |
| Coordinates | 869652..872222 (+) | Length | 856 a.a. |
| NCBI ID | WP_001048047.1 | Uniprot ID | B5ZA30 |
| Organism | Helicobacter pylori strain FDAARGOS_1563 | ||
| Function | degradation of ComK; degradation of DegU (predicted from homology) Competence regulation |
||
Genomic Context
Location: 864652..877222
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LK447_RS04185 (LK447_04185) | xseA | 864888..866150 (+) | 1263 | WP_000558338.1 | exodeoxyribonuclease VII large subunit | - |
| LK447_RS04190 (LK447_04190) | - | 866169..867323 (-) | 1155 | WP_012552368.1 | DNA methyltransferase | - |
| LK447_RS04195 (LK447_04195) | - | 867334..867948 (-) | 615 | WP_001160127.1 | hypothetical protein | - |
| LK447_RS04200 (LK447_04200) | - | 868136..868798 (+) | 663 | WP_000521764.1 | BsaWI family type II restriction enzyme | - |
| LK447_RS04205 (LK447_04205) | - | 868822..869580 (+) | 759 | WP_041201350.1 | site-specific DNA-methyltransferase | - |
| LK447_RS04210 (LK447_04210) | clpC | 869652..872222 (+) | 2571 | WP_001048047.1 | ATP-dependent Clp protease ATP-binding subunit | Regulator |
| LK447_RS04215 (LK447_04215) | - | 872280..872999 (+) | 720 | WP_012552370.1 | cytochrome c biogenesis protein CcdA | - |
| LK447_RS04220 (LK447_04220) | - | 873009..874145 (+) | 1137 | WP_000924841.1 | amidohydrolase family protein | - |
| LK447_RS04225 (LK447_04225) | mqnF | 874130..875359 (+) | 1230 | WP_001155844.1 | aminofutalosine deaminase | - |
| LK447_RS04230 (LK447_04230) | - | 875420..875662 (+) | 243 | WP_000780044.1 | nuclease | - |
| LK447_RS04235 (LK447_04235) | miaB | 875672..876985 (+) | 1314 | WP_000870242.1 | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | - |
Sequence
Protein
Download Length: 856 a.a. Molecular weight: 96590.48 Da Isoelectric Point: 6.3725
>NTDB_id=539294 LK447_RS04210 WP_001048047.1 869652..872222(+) (clpC) [Helicobacter pylori strain FDAARGOS_1563]
MNLFEKTTDQLHETLDSALALALHHKNAEVTPLHMLFVMLNNSQGILIQALQKMPVDIEALKLSVQSELNKFAKVSQISK
QNIQLNQALIQSLENAQGLMAKRGDSFIATDVYLLANMSLFESVLKPYLDTKELQKTLESLRKGRTIQDKNDDSNLESLE
KFGIDLTQKALENKLDPVIGRDEEIIRMMQILIRKTKNNPILLGEPGVGKTAVVEGLAQRIVNKEVPKTLLNKRVIALDL
SLLVAGAKYRGEFEERLKKVIEEVKKSANVILFIDEIHTIVGAGASEGGMDAANILKPALARGELHTIGATTLKEYRKYF
EKDMALQRRFQPILLNEPSINEALQILRGLKETLETHHNITINDSALIASAKLSSRYITDRFLPDKAIDLIDEGAAQLKM
QMESEPAKLSSVKRSIQRLEMEKQALEMEKKESNAKRMQEILKELSDLKEEKIKLEAQFENEKEVFKEISRLKMEMESLK
KEAERFKRNGDYQQAGEIEYSKIPENKKKEEELQRKWEAMQQNGALLQNALTENNIAEIVSQWTHIPVQKMLQSEKNRVL
NIESELQKRVVGQEKAIKAIAKAIKRNKAGLSDSNKPIGSFLFLGPTGVGKTESAKALAQFLFDSDKNLIRIDMSEYLEK
HAISRLIGAAPGYVGYEEGGQLTEAVRRKPYSVVLLDEVEKAHPDVFNLLLQVLDEGHLTDSKGVRVDFKNTILILTSNV
ASGALLEEDLSEADKQKAIKESLRQFFKPEFLNRLDEIISFNALDSHAVANIVGILFENIQKKALERGINITLDEKAKEL
IAEAGFDRFYGARPLKRALYEMVEDKLAELILEDKVKENDSVAFVVENNEIVPKIK
MNLFEKTTDQLHETLDSALALALHHKNAEVTPLHMLFVMLNNSQGILIQALQKMPVDIEALKLSVQSELNKFAKVSQISK
QNIQLNQALIQSLENAQGLMAKRGDSFIATDVYLLANMSLFESVLKPYLDTKELQKTLESLRKGRTIQDKNDDSNLESLE
KFGIDLTQKALENKLDPVIGRDEEIIRMMQILIRKTKNNPILLGEPGVGKTAVVEGLAQRIVNKEVPKTLLNKRVIALDL
SLLVAGAKYRGEFEERLKKVIEEVKKSANVILFIDEIHTIVGAGASEGGMDAANILKPALARGELHTIGATTLKEYRKYF
EKDMALQRRFQPILLNEPSINEALQILRGLKETLETHHNITINDSALIASAKLSSRYITDRFLPDKAIDLIDEGAAQLKM
QMESEPAKLSSVKRSIQRLEMEKQALEMEKKESNAKRMQEILKELSDLKEEKIKLEAQFENEKEVFKEISRLKMEMESLK
KEAERFKRNGDYQQAGEIEYSKIPENKKKEEELQRKWEAMQQNGALLQNALTENNIAEIVSQWTHIPVQKMLQSEKNRVL
NIESELQKRVVGQEKAIKAIAKAIKRNKAGLSDSNKPIGSFLFLGPTGVGKTESAKALAQFLFDSDKNLIRIDMSEYLEK
HAISRLIGAAPGYVGYEEGGQLTEAVRRKPYSVVLLDEVEKAHPDVFNLLLQVLDEGHLTDSKGVRVDFKNTILILTSNV
ASGALLEEDLSEADKQKAIKESLRQFFKPEFLNRLDEIISFNALDSHAVANIVGILFENIQKKALERGINITLDEKAKEL
IAEAGFDRFYGARPLKRALYEMVEDKLAELILEDKVKENDSVAFVVENNEIVPKIK
Nucleotide
Download Length: 2571 bp
>NTDB_id=539294 LK447_RS04210 WP_001048047.1 869652..872222(+) (clpC) [Helicobacter pylori strain FDAARGOS_1563]
ATGAATTTATTTGAAAAGACGACTGACCAATTGCATGAGACTTTAGACAGCGCACTCGCTTTAGCCTTACACCACAAAAA
CGCTGAAGTAACGCCCTTGCACATGCTTTTTGTCATGCTTAATAACTCCCAAGGCATTCTCATTCAAGCCTTACAAAAAA
TGCCTGTGGATATTGAAGCTTTAAAGCTTAGCGTTCAAAGCGAGTTGAATAAGTTCGCTAAAGTTTCACAAATCAGCAAG
CAAAATATCCAATTAAACCAAGCTCTAATCCAAAGTTTAGAAAACGCTCAAGGCTTGATGGCTAAAAGGGGCGATTCTTT
CATCGCTACCGATGTGTATCTTTTGGCGAATATGAGTCTTTTTGAAAGCGTTCTAAAGCCTTATTTAGACACTAAGGAAT
TGCAAAAAACTTTAGAATCTTTAAGAAAAGGCAGGACTATCCAGGATAAAAATGATGATTCTAACTTGGAAAGTTTGGAA
AAATTTGGCATTGATTTGACGCAAAAAGCCTTAGAAAATAAGCTGGATCCCGTGATCGGAAGAGATGAAGAAATCATTCG
TATGATGCAAATTTTGATCAGAAAAACAAAAAATAACCCTATTTTATTGGGTGAGCCTGGAGTGGGGAAAACGGCTGTTG
TGGAAGGGCTAGCCCAACGCATTGTGAATAAGGAAGTGCCTAAAACGCTTTTAAACAAACGAGTTATCGCTTTAGATTTG
AGTTTATTGGTGGCTGGGGCGAAATACAGAGGCGAGTTTGAAGAGCGCCTGAAAAAGGTGATTGAAGAAGTTAAAAAAAG
CGCGAATGTGATTTTATTCATTGATGAAATCCACACGATTGTAGGGGCTGGGGCTAGTGAGGGGGGCATGGATGCGGCGA
ATATTTTAAAACCCGCGCTCGCTAGGGGGGAATTGCACACGATTGGAGCGACCACTTTAAAAGAATACCGCAAGTATTTT
GAAAAAGACATGGCGCTACAAAGGCGTTTCCAACCCATTTTACTCAATGAGCCTAGCATCAATGAAGCTTTACAAATTTT
AAGGGGGTTGAAAGAAACTTTAGAAACGCACCATAATATCACTATCAATGACTCCGCGCTCATAGCAAGCGCTAAACTCT
CTAGCCGTTATATCACCGATAGGTTTTTACCCGATAAAGCGATTGATTTGATTGATGAAGGGGCGGCTCAATTAAAAATG
CAAATGGAATCAGAGCCGGCCAAACTCTCTAGCGTTAAGCGCTCCATTCAAAGACTAGAAATGGAAAAACAAGCCCTTGA
AATGGAAAAAAAAGAGAGCAATGCCAAACGCATGCAAGAAATCCTTAAAGAATTGAGCGATTTGAAAGAAGAAAAAATCA
AATTAGAAGCACAATTTGAAAACGAAAAAGAAGTGTTCAAAGAAATTTCACGCTTGAAAATGGAAATGGAAAGCTTGAAA
AAAGAGGCTGAGAGGTTTAAGCGCAATGGGGATTACCAGCAAGCGGGTGAAATTGAATACTCTAAAATCCCTGAAAATAA
AAAGAAAGAAGAGGAATTGCAGCGTAAATGGGAAGCGATGCAACAAAACGGGGCGTTGTTGCAAAACGCTTTAACCGAAA
ACAACATCGCTGAGATCGTGAGCCAATGGACGCACATCCCGGTCCAAAAAATGCTCCAAAGCGAAAAAAATAGGGTTTTA
AACATTGAAAGCGAATTGCAAAAAAGGGTGGTGGGGCAAGAAAAAGCGATCAAAGCGATCGCTAAAGCGATTAAGAGGAA
TAAGGCCGGGCTTAGCGATAGCAATAAACCCATAGGGAGTTTCCTCTTTTTAGGGCCAACAGGCGTGGGTAAAACCGAGA
GCGCTAAAGCCTTGGCGCAATTCTTGTTTGATAGCGATAAAAACCTTATACGAATTGACATGAGCGAATATTTGGAAAAG
CATGCCATAAGCCGTCTTATTGGGGCTGCTCCTGGGTATGTGGGCTATGAAGAAGGCGGGCAATTGACCGAAGCGGTCCG
CAGAAAGCCTTATAGCGTGGTGCTGTTAGATGAAGTGGAAAAAGCCCATCCGGATGTGTTTAACCTCTTGTTGCAGGTTT
TAGATGAAGGGCATTTAACCGATAGTAAGGGCGTGAGGGTGGATTTTAAAAACACGATTTTGATTTTAACCAGCAATGTG
GCTAGCGGTGCGCTTTTGGAAGAAGATTTGAGCGAAGCCGATAAACAAAAAGCGATTAAAGAGAGCTTGAGGCAATTCTT
CAAGCCGGAATTTTTAAACCGCTTAGATGAAATCATCTCCTTTAACGCCCTAGATAGTCATGCTGTCGCTAATATTGTGG
GGATACTCTTTGAAAACATTCAAAAAAAAGCGCTTGAAAGGGGCATTAATATAACCCTAGACGAAAAAGCAAAAGAATTG
ATCGCTGAAGCGGGATTTGACAGATTTTATGGCGCTAGACCCCTAAAGCGCGCGCTCTATGAAATGGTAGAAGACAAGCT
CGCTGAACTCATTTTAGAGGATAAAGTTAAAGAGAATGACAGCGTGGCGTTTGTGGTAGAAAATAACGAGATTGTGCCTA
AGATTAAGTGA
ATGAATTTATTTGAAAAGACGACTGACCAATTGCATGAGACTTTAGACAGCGCACTCGCTTTAGCCTTACACCACAAAAA
CGCTGAAGTAACGCCCTTGCACATGCTTTTTGTCATGCTTAATAACTCCCAAGGCATTCTCATTCAAGCCTTACAAAAAA
TGCCTGTGGATATTGAAGCTTTAAAGCTTAGCGTTCAAAGCGAGTTGAATAAGTTCGCTAAAGTTTCACAAATCAGCAAG
CAAAATATCCAATTAAACCAAGCTCTAATCCAAAGTTTAGAAAACGCTCAAGGCTTGATGGCTAAAAGGGGCGATTCTTT
CATCGCTACCGATGTGTATCTTTTGGCGAATATGAGTCTTTTTGAAAGCGTTCTAAAGCCTTATTTAGACACTAAGGAAT
TGCAAAAAACTTTAGAATCTTTAAGAAAAGGCAGGACTATCCAGGATAAAAATGATGATTCTAACTTGGAAAGTTTGGAA
AAATTTGGCATTGATTTGACGCAAAAAGCCTTAGAAAATAAGCTGGATCCCGTGATCGGAAGAGATGAAGAAATCATTCG
TATGATGCAAATTTTGATCAGAAAAACAAAAAATAACCCTATTTTATTGGGTGAGCCTGGAGTGGGGAAAACGGCTGTTG
TGGAAGGGCTAGCCCAACGCATTGTGAATAAGGAAGTGCCTAAAACGCTTTTAAACAAACGAGTTATCGCTTTAGATTTG
AGTTTATTGGTGGCTGGGGCGAAATACAGAGGCGAGTTTGAAGAGCGCCTGAAAAAGGTGATTGAAGAAGTTAAAAAAAG
CGCGAATGTGATTTTATTCATTGATGAAATCCACACGATTGTAGGGGCTGGGGCTAGTGAGGGGGGCATGGATGCGGCGA
ATATTTTAAAACCCGCGCTCGCTAGGGGGGAATTGCACACGATTGGAGCGACCACTTTAAAAGAATACCGCAAGTATTTT
GAAAAAGACATGGCGCTACAAAGGCGTTTCCAACCCATTTTACTCAATGAGCCTAGCATCAATGAAGCTTTACAAATTTT
AAGGGGGTTGAAAGAAACTTTAGAAACGCACCATAATATCACTATCAATGACTCCGCGCTCATAGCAAGCGCTAAACTCT
CTAGCCGTTATATCACCGATAGGTTTTTACCCGATAAAGCGATTGATTTGATTGATGAAGGGGCGGCTCAATTAAAAATG
CAAATGGAATCAGAGCCGGCCAAACTCTCTAGCGTTAAGCGCTCCATTCAAAGACTAGAAATGGAAAAACAAGCCCTTGA
AATGGAAAAAAAAGAGAGCAATGCCAAACGCATGCAAGAAATCCTTAAAGAATTGAGCGATTTGAAAGAAGAAAAAATCA
AATTAGAAGCACAATTTGAAAACGAAAAAGAAGTGTTCAAAGAAATTTCACGCTTGAAAATGGAAATGGAAAGCTTGAAA
AAAGAGGCTGAGAGGTTTAAGCGCAATGGGGATTACCAGCAAGCGGGTGAAATTGAATACTCTAAAATCCCTGAAAATAA
AAAGAAAGAAGAGGAATTGCAGCGTAAATGGGAAGCGATGCAACAAAACGGGGCGTTGTTGCAAAACGCTTTAACCGAAA
ACAACATCGCTGAGATCGTGAGCCAATGGACGCACATCCCGGTCCAAAAAATGCTCCAAAGCGAAAAAAATAGGGTTTTA
AACATTGAAAGCGAATTGCAAAAAAGGGTGGTGGGGCAAGAAAAAGCGATCAAAGCGATCGCTAAAGCGATTAAGAGGAA
TAAGGCCGGGCTTAGCGATAGCAATAAACCCATAGGGAGTTTCCTCTTTTTAGGGCCAACAGGCGTGGGTAAAACCGAGA
GCGCTAAAGCCTTGGCGCAATTCTTGTTTGATAGCGATAAAAACCTTATACGAATTGACATGAGCGAATATTTGGAAAAG
CATGCCATAAGCCGTCTTATTGGGGCTGCTCCTGGGTATGTGGGCTATGAAGAAGGCGGGCAATTGACCGAAGCGGTCCG
CAGAAAGCCTTATAGCGTGGTGCTGTTAGATGAAGTGGAAAAAGCCCATCCGGATGTGTTTAACCTCTTGTTGCAGGTTT
TAGATGAAGGGCATTTAACCGATAGTAAGGGCGTGAGGGTGGATTTTAAAAACACGATTTTGATTTTAACCAGCAATGTG
GCTAGCGGTGCGCTTTTGGAAGAAGATTTGAGCGAAGCCGATAAACAAAAAGCGATTAAAGAGAGCTTGAGGCAATTCTT
CAAGCCGGAATTTTTAAACCGCTTAGATGAAATCATCTCCTTTAACGCCCTAGATAGTCATGCTGTCGCTAATATTGTGG
GGATACTCTTTGAAAACATTCAAAAAAAAGCGCTTGAAAGGGGCATTAATATAACCCTAGACGAAAAAGCAAAAGAATTG
ATCGCTGAAGCGGGATTTGACAGATTTTATGGCGCTAGACCCCTAAAGCGCGCGCTCTATGAAATGGTAGAAGACAAGCT
CGCTGAACTCATTTTAGAGGATAAAGTTAAAGAGAATGACAGCGTGGCGTTTGTGGTAGAAAATAACGAGATTGTGCCTA
AGATTAAGTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
43.443 |
99.766 |
0.433 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
45.467 |
86.332 |
0.393 |