Detailed information NTG0539286

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: JVX94_RS07915
• Genome accession: NZ_CP070345
• Coordinates: 1519638..1521740 (+)
• Length: 700 a.a.
• NCBI ID: WP_205185141.1
• Uniprot ID: -
• Organism: Bacillus sp. PDNC022
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 1514638..1526740

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JVX94_RS07885 (JVX94_07885)	-	1515260..1515478 (-)	219	WP_120207154.1	hypothetical protein	-
JVX94_RS07890 (JVX94_07890)	queF	1515739..1516236 (-)	498	WP_003211403.1	preQ(1) synthase	-
JVX94_RS07895 (JVX94_07895)	queE	1516252..1516983 (-)	732	WP_203129726.1	7-carboxy-7-deazaguanine synthase QueE	-
JVX94_RS07900 (JVX94_07900)	queD	1516976..1517416 (-)	441	WP_095408338.1	6-carboxytetrahydropterin synthase QueD	-
JVX94_RS07905 (JVX94_07905)	queC	1517417..1518073 (-)	657	WP_024424683.1	7-cyano-7-deazaguanine synthase QueC	-
JVX94_RS07910 (JVX94_07910)	-	1518350..1519393 (-)	1044	WP_095408337.1	hypothetical protein	-
JVX94_RS07915 (JVX94_07915)	clpC	1519638..1521740 (+)	2103	WP_205185141.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
JVX94_RS07920 (JVX94_07920)	motA	1522117..1522911 (+)	795	WP_111291313.1	flagellar motor stator protein MotA	-
JVX94_RS07925 (JVX94_07925)	motB	1522904..1523671 (+)	768	WP_205185144.1	flagellar motor protein MotB	-
JVX94_RS07930 (JVX94_07930)	-	1523900..1524355 (-)	456	WP_205185147.1	MarR family transcriptional regulator	-
JVX94_RS07935 (JVX94_07935)	-	1524560..1526065 (+)	1506	WP_197197785.1	ATP-binding protein	-
JVX94_RS07940 (JVX94_07940)	-	1526112..1526354 (-)	243	WP_034322108.1	aspartyl-phosphate phosphatase Spo0E family protein	-

Sequence

Protein

• Length: 700 a.a.
• Molecular weight: 77882.40 Da
• Isoelectric Point: 5.0720

>NTDB_id=539286 JVX94_RS07915 WP_205185141.1 1519638..1521740(+) (clpC) [Bacillus sp. PDNC022]
MRCQHCQVNEATIRLNMQVNSSRSQMVLCEDCYTSLMEQSKMKMGPQLFGGSSFFSQPAGHAPNGEQPKQKGLLDELGRN
LTDGANAGLIDPVIGRDEEVARVIEILNRRNKNNPVLIGEPGVGKTAIAEGLALKIASGDVPNKLKNKQIYLLDVSSLVA
NTGVRGQFEERMKQLIKELQSRKNIILFVDEIHLLVGAGSAEGSMDAGNILKPALARGELQLVGATTLKEYRQIEKDAAL
ERRFQPVIVDEPTQDEAIDILKGIQDKYEAYHGVTYSDEAIKACVQLSSRYIQDRHLPDKAIDLMDEAGSKANLSIDAAS
EDELTNRLAQIAAEKQAALKEEQYEKAAKLRDEEEAIETRLQNKTTDKEHIVTAEDIQTIVEQKTGIPVGKLQADEQTKM
KEIDVRLKARVIGQEHAVDKVAKAVKRSRAGLKSKHRPTGSFLFVGPTGVGKTELSKTLAEELFGSRDAIIRLDMSEYME
KHSVSKLIGSPPGYVGHDEAGQLTEKVRRKPYSIILLDEIEKAHPDVQHIFLQIMEDGRLTDSQGRTVSFKDTVIIMTSN
AGSADKTVKVGFQSDQEEAIEEQSLIDSLSSYFKPEFLNRFDSIIQFDSLDRNDLVKIVDLLLNELSEQLKEQNLTVHVT
NEAKEKIAELGYHPAFGARPLRRTIQEHVEDQMTEILLEEEQLSGFTVDVEHDEIVVKKG

Nucleotide

• Length: 2103 bp

>NTDB_id=539286 JVX94_RS07915 WP_205185141.1 1519638..1521740(+) (clpC) [Bacillus sp. PDNC022]
ATGCGTTGTCAACATTGTCAAGTAAATGAAGCAACTATTCGCCTGAATATGCAAGTGAATTCGTCCCGGAGCCAAATGGT
TTTATGTGAAGACTGCTACACCTCTTTGATGGAGCAGTCAAAAATGAAAATGGGACCTCAGCTGTTTGGAGGAAGTTCAT
TTTTCTCTCAGCCAGCAGGACATGCCCCAAACGGGGAGCAGCCAAAACAAAAAGGCTTACTTGATGAGCTTGGCCGTAAC
TTAACAGATGGAGCAAATGCTGGTTTAATTGATCCAGTCATTGGCCGTGATGAAGAAGTCGCAAGAGTCATTGAGATTTT
AAATAGAAGAAATAAAAATAATCCTGTTCTTATTGGTGAACCAGGTGTTGGGAAAACAGCGATCGCAGAAGGACTCGCGC
TGAAAATTGCGAGCGGCGATGTGCCAAATAAATTAAAGAACAAACAAATCTATTTATTAGATGTCTCCTCACTTGTCGCA
AACACAGGTGTACGCGGTCAATTTGAGGAAAGAATGAAGCAGTTAATCAAAGAACTGCAAAGCCGTAAAAATATCATCTT
ATTTGTAGATGAAATCCACCTTCTTGTGGGCGCAGGCTCTGCAGAAGGATCAATGGATGCTGGAAACATTTTAAAACCAG
CCCTTGCAAGAGGCGAACTGCAGCTAGTAGGTGCGACGACATTAAAAGAATATCGCCAAATTGAAAAAGATGCTGCACTC
GAACGGCGCTTCCAGCCCGTCATCGTAGATGAGCCAACACAAGATGAAGCGATCGACATCTTAAAAGGCATTCAAGATAA
ATACGAGGCCTATCATGGTGTCACCTATTCAGATGAAGCAATCAAAGCGTGCGTTCAATTATCTTCGCGGTATATTCAAG
ACCGTCATTTACCGGATAAAGCCATTGATTTAATGGATGAAGCTGGTTCAAAAGCGAACCTCTCCATTGATGCAGCAAGT
GAAGATGAGCTGACAAACCGATTAGCGCAAATTGCCGCAGAAAAACAAGCTGCGCTAAAAGAAGAACAATATGAAAAAGC
AGCGAAGCTTCGCGATGAAGAAGAAGCCATTGAAACAAGACTTCAAAACAAAACAACTGACAAAGAACATATCGTCACAG
CAGAGGACATTCAGACCATTGTGGAACAAAAAACAGGCATTCCTGTCGGTAAACTGCAAGCAGACGAACAAACCAAAATG
AAAGAAATTGACGTCCGTCTAAAAGCACGAGTGATTGGGCAGGAGCATGCGGTTGATAAAGTGGCCAAAGCCGTGAAAAG
AAGCAGAGCTGGATTAAAATCGAAACATAGACCAACAGGCTCCTTCCTTTTCGTTGGACCAACAGGTGTCGGGAAAACCG
AATTGTCTAAAACGTTAGCTGAAGAATTATTCGGTTCAAGAGATGCGATCATTCGTTTAGATATGAGTGAGTACATGGAA
AAACACTCTGTGTCCAAACTCATCGGTTCTCCTCCTGGTTACGTTGGACATGATGAAGCTGGCCAGCTGACTGAAAAAGT
GCGCAGAAAACCATACAGCATCATTTTGCTGGATGAAATCGAAAAAGCACACCCAGATGTACAGCACATCTTCCTTCAAA
TCATGGAAGATGGCCGCTTAACAGACAGCCAAGGCAGAACGGTCAGCTTTAAAGATACAGTCATCATTATGACAAGTAAC
GCAGGCAGCGCAGATAAAACGGTCAAGGTCGGCTTCCAGTCTGATCAAGAAGAAGCGATTGAGGAACAATCACTCATTGA
TTCACTCAGCAGCTACTTCAAACCAGAATTCTTGAACCGTTTTGACAGCATCATTCAGTTTGATTCATTAGACAGAAATG
ATTTAGTGAAGATTGTTGATCTTCTGCTCAATGAGCTGTCAGAGCAATTAAAAGAGCAGAATTTAACAGTCCATGTCACA
AATGAAGCGAAAGAAAAAATCGCAGAGCTTGGATATCACCCTGCATTTGGTGCTCGTCCACTTCGGAGAACCATCCAAGA
GCACGTTGAAGATCAAATGACGGAGATCTTGCTTGAAGAGGAGCAGCTTTCTGGATTTACTGTGGATGTTGAACATGACG
AAATCGTCGTAAAAAAAGGATAA

Domains

Predicted by InterproScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (437-604)

• ATPase family associated with various cellular activities (AAA) (AAA) (116-248)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (610-687)

• AAA lid domain (AAA_lid_9) (253-353)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Lactococcus lactis subsp. cremoris KW2	56.64	100	0.597
clpE	Streptococcus mutans UA159	56.199	100	0.596
clpE	Streptococcus pneumoniae Rx1	55.387	100	0.573
clpE	Streptococcus pneumoniae D39	55.387	100	0.573
clpE	Streptococcus pneumoniae R6	55.387	100	0.573
clpE	Streptococcus pneumoniae TIGR4	55.387	100	0.573
clpC	Bacillus subtilis subsp. subtilis str. 168	54.03	95.714	0.517
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	47.077	92.857	0.437
clpC	Streptococcus thermophilus LMD-9	45.975	92.286	0.424
clpC	Streptococcus thermophilus LMG 18311	45.666	92.286	0.421
clpC	Streptococcus pneumoniae TIGR4	44.795	90.571	0.406
clpC	Streptococcus pneumoniae Rx1	44.992	89.857	0.404
clpC	Streptococcus pneumoniae D39	44.992	89.857	0.404
clpC	Streptococcus mutans UA159	44.603	90	0.401