Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   JVX94_RS07505 Genome accession   NZ_CP070345
Coordinates   1443878..1444156 (-) Length   92 a.a.
NCBI ID   WP_017359400.1    Uniprot ID   A0A9X0FXL5
Organism   Bacillus sp. PDNC022     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1438878..1449156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JVX94_RS07485 (JVX94_07485) ade 1438883..1440613 (-) 1731 WP_205185090.1 adenine deaminase -
  JVX94_RS07490 (JVX94_07490) - 1440876..1441544 (-) 669 WP_008345123.1 TrkA family potassium uptake protein -
  JVX94_RS07495 (JVX94_07495) - 1441582..1442418 (-) 837 WP_205185092.1 gamma-glutamylcyclotransferase family protein -
  JVX94_RS07500 (JVX94_07500) - 1442423..1443733 (-) 1311 WP_205185094.1 ATP-binding protein -
  JVX94_RS07505 (JVX94_07505) abrB 1443878..1444156 (-) 279 WP_017359400.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  JVX94_RS07510 (JVX94_07510) mreBH 1444433..1445440 (+) 1008 WP_024424745.1 rod-share determining protein MreBH -
  JVX94_RS07515 (JVX94_07515) - 1445515..1445646 (+) 132 WP_003210922.1 protein YkpC -
  JVX94_RS07520 (JVX94_07520) - 1445753..1446985 (+) 1233 WP_095408383.1 aminopeptidase -
  JVX94_RS07525 (JVX94_07525) - 1447019..1448638 (-) 1620 WP_041084974.1 ATP-binding cassette domain-containing protein -
  JVX94_RS07530 (JVX94_07530) - 1448782..1449057 (+) 276 WP_095408381.1 hypothetical protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10305.97 Da        Isoelectric Point: 4.5332

>NTDB_id=539283 JVX94_RS07505 WP_017359400.1 1443878..1444156(-) (abrB) [Bacillus sp. PDNC022]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSMEFFIDGDKIVLKKYQPEGVCLMTGEITSENHEYGNGQITLSAEGAE
LLLKELQEALQQ

Nucleotide


Download         Length: 279 bp        

>NTDB_id=539283 JVX94_RS07505 WP_017359400.1 1443878..1444156(-) (abrB) [Bacillus sp. PDNC022]
TTGAAATCTATCGGAGTCGTAAGAAAAGTAGACGAACTAGGGCGTATTGTCATGCCAATCGAATTGAGAAGAGCACTTGA
TATCGCTATTAAAGACAGTATGGAATTTTTTATAGATGGAGATAAAATCGTCTTGAAAAAATATCAGCCAGAGGGTGTTT
GTCTCATGACTGGTGAGATTACATCAGAGAACCATGAATACGGAAATGGTCAAATTACATTAAGCGCTGAAGGCGCAGAA
CTGCTGTTAAAAGAGCTGCAAGAAGCTCTTCAGCAGTAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.348

100

0.543