Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   JVX94_RS06020 Genome accession   NZ_CP070345
Coordinates   1142804..1144054 (-) Length   416 a.a.
NCBI ID   WP_144470564.1    Uniprot ID   -
Organism   Bacillus sp. PDNC022     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1137804..1149054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JVX94_RS06005 (JVX94_06005) rny 1138467..1140029 (-) 1563 WP_003211958.1 ribonuclease Y -
  JVX94_RS06010 (JVX94_06010) - 1140263..1141438 (-) 1176 WP_205184925.1 serine hydrolase domain-containing protein -
  JVX94_RS06015 (JVX94_06015) recA 1141582..1142625 (-) 1044 WP_047202210.1 recombinase RecA Machinery gene
  JVX94_RS06020 (JVX94_06020) cinA 1142804..1144054 (-) 1251 WP_144470564.1 competence/damage-inducible protein A Machinery gene
  JVX94_RS06025 (JVX94_06025) pgsA 1144071..1144652 (-) 582 WP_047202208.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  JVX94_RS06030 (JVX94_06030) - 1144728..1145627 (-) 900 WP_205184927.1 helix-turn-helix domain-containing protein -
  JVX94_RS06035 (JVX94_06035) - 1145651..1146442 (-) 792 WP_003211480.1 DUF3388 domain-containing protein -
  JVX94_RS06040 (JVX94_06040) - 1146574..1146831 (-) 258 WP_095408546.1 DUF3243 domain-containing protein -
  JVX94_RS06045 (JVX94_06045) - 1146905..1147636 (-) 732 WP_095408545.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45649.70 Da        Isoelectric Point: 4.8565

>NTDB_id=539280 JVX94_RS06020 WP_144470564.1 1142804..1144054(-) (cinA) [Bacillus sp. PDNC022]
MKSERKAEIIAVGSELLLGQITNTNAQFISKQLAEIGVNVYYHTAVGDNPERLKQAIQVAQERSNFIIFSGGLGPTKDDL
TKETIASTLGKELVLNEEAFESIQDYFRKTGRDMSPNNRKQALVLEGSDVLVNRFGMAPGMFVQEDDTFYMLLPGPPSEL
HPMFENEAKPLISEKLGLKEKIVSVVLRFFGIGESQLETDLEDLIDAQTNPTIAPLASDGEVTLRLTAKHEDEKETERLL
KETETKILARVGEYFYGYGDTSLVREASKALHEHGKTVAAAESLTGGMFSEWLTDLEGASSILNGSVVCYTNQVKQQVLG
CREETLSSHGAVSKECALELAEGVRKLTGSDIGISFTGVAGPDTHEGQPVGKVFIGLSTKDQTDVFEWMFTGSRSGIRKR
AVKYGLHHLLNLLKES

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=539280 JVX94_RS06020 WP_144470564.1 1142804..1144054(-) (cinA) [Bacillus sp. PDNC022]
TTGAAGTCAGAGAGAAAAGCAGAAATTATTGCAGTCGGTTCCGAACTATTGCTAGGGCAAATTACGAATACGAATGCACA
ATTCATCAGCAAACAACTAGCTGAAATTGGTGTGAATGTTTATTACCACACAGCAGTTGGTGACAATCCAGAGCGTTTAA
AACAGGCCATTCAGGTGGCGCAGGAAAGATCTAATTTTATTATCTTCTCAGGTGGTCTTGGACCAACTAAAGATGACTTA
ACAAAAGAAACGATTGCGAGCACGCTCGGGAAAGAGCTTGTGCTAAATGAAGAAGCATTTGAATCGATTCAAGACTACTT
TCGAAAGACCGGCCGCGATATGTCACCGAACAACCGTAAACAGGCGCTCGTTCTAGAAGGATCTGATGTGCTTGTGAACC
GTTTTGGGATGGCCCCAGGTATGTTTGTTCAAGAAGACGATACGTTTTATATGCTTCTTCCTGGACCGCCAAGTGAACTG
CACCCGATGTTTGAAAATGAGGCAAAGCCGCTGATCTCTGAGAAACTTGGCTTAAAGGAAAAAATCGTGTCTGTTGTTCT
GCGTTTCTTCGGAATCGGTGAATCGCAGCTTGAAACAGACCTAGAAGACTTAATTGATGCTCAAACGAATCCGACGATTG
CACCACTCGCATCTGACGGTGAAGTGACGCTAAGGCTAACTGCTAAGCATGAGGATGAAAAAGAAACAGAGCGTCTGTTA
AAAGAAACAGAAACGAAAATTTTAGCGCGGGTAGGTGAGTATTTCTACGGATATGGGGATACATCACTTGTCCGCGAAGC
GTCCAAAGCCTTGCACGAACACGGAAAAACAGTAGCAGCAGCAGAAAGCCTGACTGGCGGAATGTTCTCCGAATGGCTGA
CAGATCTCGAAGGAGCGTCATCCATTTTGAACGGAAGTGTGGTTTGTTATACAAACCAAGTCAAACAGCAGGTACTTGGC
TGCCGGGAGGAAACATTGTCTTCCCATGGCGCTGTCAGCAAAGAGTGTGCTTTAGAGCTTGCTGAAGGGGTTAGAAAGCT
GACCGGAAGTGATATTGGCATTAGCTTTACGGGTGTAGCAGGCCCTGATACCCATGAGGGTCAGCCTGTTGGAAAAGTGT
TCATTGGTCTATCGACAAAAGACCAGACGGATGTGTTTGAATGGATGTTTACAGGCAGCCGGTCGGGCATTCGAAAGCGT
GCTGTGAAATATGGTCTGCATCACTTACTCAACTTATTAAAAGAGAGTTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(186-257)

Competence-damaged protein (CinA)

(262-412)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

74.94

99.76

0.748
  cinA Streptococcus mutans UA159

48.317

100

0.483
  cinA Streptococcus mitis SK321

47.743

100

0.483
  cinA Streptococcus mitis NCTC 12261

47.506

100

0.481
  cinA Streptococcus pneumoniae TIGR4

47.506

100

0.481
  cinA Streptococcus pneumoniae Rx1

47.268

100

0.478
  cinA Streptococcus pneumoniae R6

47.268

100

0.478
  cinA Streptococcus pneumoniae D39

47.031

100

0.476
  cinA Streptococcus suis isolate S10

43.122

90.865

0.392