Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   JVX94_RS05370 Genome accession   NZ_CP070345
Coordinates   1022855..1023235 (-) Length   126 a.a.
NCBI ID   WP_223250982.1    Uniprot ID   -
Organism   Bacillus sp. PDNC022     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1017855..1028235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JVX94_RS05340 (JVX94_05340) yneA 1018112..1018423 (-) 312 WP_024425130.1 cell division suppressor protein YneA -
  JVX94_RS05345 (JVX94_05345) lexA 1018583..1019203 (+) 621 WP_034283422.1 transcriptional repressor LexA -
  JVX94_RS05350 (JVX94_05350) - 1019326..1020476 (+) 1151 WP_205183496.1 IS3 family transposase -
  JVX94_RS05355 (JVX94_05355) - 1020538..1020987 (-) 450 WP_095408610.1 hypothetical protein -
  JVX94_RS05360 (JVX94_05360) - 1021286..1021828 (+) 543 WP_095408609.1 IseA DL-endopeptidase inhibitor family protein -
  JVX94_RS05365 (JVX94_05365) - 1021860..1022708 (-) 849 WP_095408608.1 STAS domain-containing protein -
  JVX94_RS05370 (JVX94_05370) nucA/comI 1022855..1023235 (-) 381 WP_223250982.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  JVX94_RS05375 (JVX94_05375) - 1023468..1024376 (-) 909 WP_039178896.1 trypsin-like serine protease -
  JVX94_RS05380 (JVX94_05380) - 1024571..1027714 (-) 3144 WP_205184785.1 bifunctional cytochrome P450/NADPH--P450 reductase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13713.38 Da        Isoelectric Point: 8.5068

>NTDB_id=539278 JVX94_RS05370 WP_223250982.1 1022855..1023235(-) (nucA/comI) [Bacillus sp. PDNC022]
MGTLLGGFGEKQAAKGADRYDHVVQFPKERYPETGSHIQDAIRKGHSDVCTIDRNGADARRQESLKGIPTKPGFDRDEWP
MAVCLEGGKGASVQYVSPSDNRGAGSWVGHQISGFPDGKRILFIVK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=539278 JVX94_RS05370 WP_223250982.1 1022855..1023235(-) (nucA/comI) [Bacillus sp. PDNC022]
ATGGGCACGTTGTTAGGTGGATTTGGAGAGAAGCAGGCAGCAAAAGGTGCTGATCGATATGATCATGTTGTTCAATTTCC
AAAGGAACGATACCCTGAAACAGGCAGTCATATTCAAGATGCCATTCGAAAAGGGCATTCAGATGTGTGTACCATTGACC
GAAATGGAGCAGATGCCCGCAGGCAAGAATCATTAAAAGGAATTCCGACAAAACCTGGCTTTGACCGGGATGAATGGCCG
ATGGCGGTTTGTCTTGAGGGAGGAAAAGGCGCAAGCGTTCAATATGTCAGTCCATCTGATAATAGGGGAGCAGGCTCATG
GGTCGGCCATCAAATCAGTGGGTTTCCTGATGGAAAAAGAATATTATTCATTGTGAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(29-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

58.824

94.444

0.556