Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   JVX94_RS03905 Genome accession   NZ_CP070345
Coordinates   726136..726771 (-) Length   211 a.a.
NCBI ID   WP_095408853.1    Uniprot ID   -
Organism   Bacillus sp. PDNC022     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 721136..731771
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JVX94_RS03885 (JVX94_03885) - 721489..722193 (+) 705 WP_095408857.1 DnaD domain-containing protein -
  JVX94_RS03890 (JVX94_03890) nth 722211..722873 (+) 663 WP_144484483.1 endonuclease III -
  JVX94_RS03895 (JVX94_03895) - 722870..723379 (+) 510 WP_144470943.1 YpoC family protein -
  JVX94_RS03900 (JVX94_03900) - 723417..726116 (-) 2700 WP_144484480.1 PBP1A family penicillin-binding protein -
  JVX94_RS03905 (JVX94_03905) recU 726136..726771 (-) 636 WP_095408853.1 Holliday junction resolvase RecU Machinery gene
  JVX94_RS03910 (JVX94_03910) - 726818..727774 (+) 957 WP_048239359.1 DUF2515 domain-containing protein -
  JVX94_RS03915 (JVX94_03915) sspM 727798..727902 (-) 105 WP_012010346.1 acid-soluble spore protein SspM -
  JVX94_RS03920 (JVX94_03920) - 728100..728333 (+) 234 WP_238409345.1 DUF5446 family protein -
  JVX94_RS03925 (JVX94_03925) - 728383..728763 (+) 381 WP_240193796.1 YppE family protein -
  JVX94_RS03930 (JVX94_03930) - 728871..729329 (+) 459 WP_238409343.1 YppG family protein -
  JVX94_RS03935 (JVX94_03935) - 729350..729769 (-) 420 WP_095408851.1 Hsp20/alpha crystallin family protein -
  JVX94_RS03940 (JVX94_03940) - 729938..730444 (+) 507 WP_095408850.1 PTS glucose transporter subunit IIA -
  JVX94_RS03945 (JVX94_03945) - 730503..731621 (-) 1119 WP_224928710.1 NADH-dependent flavin oxidoreductase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24315.63 Da        Isoelectric Point: 9.6581

>NTDB_id=539277 JVX94_RS03905 WP_095408853.1 726136..726771(-) (recU) [Bacillus sp. PDNC022]
MIRYPNGKSYQPIQQIGTKKRISGESSYSNRGMTLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYKGRYIDFEAKETKSTTSFPLKNFHDHQIEHMKQVEKQGGICFVIISAFGSVYYLPASDLFFFWERQQ
QNGRKSISKDELMEAGHIMTLGYSPRIDYIKVVETLHFSDESKQQLRSKKV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=539277 JVX94_RS03905 WP_095408853.1 726136..726771(-) (recU) [Bacillus sp. PDNC022]
ATGATTCGGTATCCAAACGGAAAATCGTATCAGCCCATTCAACAAATTGGGACAAAAAAAAGAATCAGCGGCGAATCCTC
TTATAGTAACCGCGGGATGACGCTTGAGGCTGATTTAAATGAAACGAACCAATACTATTTGGTCAACGGGATCGCAGTCA
TTCATAAAAAGCCTACCCCAGTTCAAATTGTGAATGTGGATTATCCAAAAAGAAGTGCTGCTGTCATTAAAGAAGCCTAT
TTTAAACAATCATCCACAACGGACTATAACGGGGTGTACAAAGGTCGCTATATCGATTTTGAAGCAAAGGAAACCAAAAG
CACTACCTCGTTTCCGCTCAAAAATTTCCACGACCATCAAATTGAGCATATGAAACAGGTTGAAAAGCAAGGCGGTATTT
GTTTCGTTATTATATCCGCTTTTGGCTCCGTTTATTATTTGCCCGCTTCAGATCTCTTTTTCTTCTGGGAGCGGCAGCAG
CAAAACGGCCGTAAATCCATTAGCAAAGACGAATTAATGGAAGCAGGTCACATAATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGAAAGCAAGCAGCAATTACGTTCGAAAAAGGTTTAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

72.772

95.735

0.697