Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   JVX94_RS02775 Genome accession   NZ_CP070345
Coordinates   521781..522116 (-) Length   111 a.a.
NCBI ID   WP_024422969.1    Uniprot ID   -
Organism   Bacillus sp. PDNC022     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 516781..527116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JVX94_RS02730 (JVX94_02730) comGC 516991..517284 (+) 294 WP_024422977.1 competence type IV pilus major pilin ComGC Machinery gene
  JVX94_RS02735 (JVX94_02735) comGD 517277..517723 (+) 447 WP_205184480.1 competence type IV pilus minor pilin ComGD -
  JVX94_RS19650 comGE 517707..518021 (+) 315 WP_144484624.1 competence type IV pilus minor pilin ComGE -
  JVX94_RS02740 (JVX94_02740) comGF 517933..518460 (+) 528 WP_186437312.1 competence type IV pilus minor pilin ComGF -
  JVX94_RS02745 (JVX94_02745) comGG 518457..518840 (+) 384 WP_205184482.1 competence type IV pilus minor pilin ComGG -
  JVX94_RS02750 (JVX94_02750) - 518900..519094 (+) 195 WP_024718846.1 YqzE family protein -
  JVX94_RS02755 (JVX94_02755) - 519128..519406 (-) 279 WP_223251017.1 DUF3889 domain-containing protein -
  JVX94_RS02760 (JVX94_02760) tapA 519706..520233 (+) 528 WP_095408998.1 amyloid fiber anchoring/assembly protein TapA -
  JVX94_RS02765 (JVX94_02765) - 520286..520858 (+) 573 WP_205184484.1 signal peptidase I -
  JVX94_RS02770 (JVX94_02770) - 520913..521713 (+) 801 WP_111292280.1 TasA family protein -
  JVX94_RS02775 (JVX94_02775) sinR 521781..522116 (-) 336 WP_024422969.1 transcriptional regulator SinR Regulator
  JVX94_RS02780 (JVX94_02780) - 522150..522314 (-) 165 WP_095408995.1 anti-repressor SinI family protein -
  JVX94_RS02785 (JVX94_02785) - 522497..523294 (-) 798 WP_111292279.1 YqhG family protein -
  JVX94_RS02790 (JVX94_02790) - 523309..524979 (-) 1671 WP_144471086.1 SNF2-related protein -
  JVX94_RS02795 (JVX94_02795) gcvT 525541..526638 (+) 1098 WP_095408992.1 glycine cleavage system aminomethyltransferase GcvT -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12978.56 Da        Isoelectric Point: 5.0026

>NTDB_id=539274 JVX94_RS02775 WP_024422969.1 521781..522116(-) (sinR) [Bacillus sp. PDNC022]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWRKKQEEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=539274 JVX94_RS02775 WP_024422969.1 521781..522116(-) (sinR) [Bacillus sp. PDNC022]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTTTTAAACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAGAAAAAA
GCAAGAAGAGGAGTAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(74-101)

Helix-turn-helix (HTH_3)

(6-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

94.595

100

0.946