Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   JVX94_RS02720 Genome accession   NZ_CP070345
Coordinates   514883..515953 (+) Length   356 a.a.
NCBI ID   WP_240193794.1    Uniprot ID   -
Organism   Bacillus sp. PDNC022     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 509883..520953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JVX94_RS02685 (JVX94_02685) - 511024..511338 (+) 315 WP_048238883.1 MTH1187 family thiamine-binding protein -
  JVX94_RS02690 (JVX94_02690) - 511562..511735 (-) 174 WP_003217333.1 DUF2759 domain-containing protein -
  JVX94_RS02695 (JVX94_02695) - 511893..512531 (+) 639 WP_095409008.1 MBL fold metallo-hydrolase -
  JVX94_RS02700 (JVX94_02700) - 512778..513020 (-) 243 WP_003217440.1 DUF2626 domain-containing protein -
  JVX94_RS02705 (JVX94_02705) - 513233..513613 (+) 381 WP_007501232.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  JVX94_RS02715 (JVX94_02715) - 513830..514705 (+) 876 WP_095409007.1 STAS domain-containing protein -
  JVX94_RS02720 (JVX94_02720) comGA 514883..515953 (+) 1071 WP_240193794.1 competence type IV pilus ATPase ComGA Machinery gene
  JVX94_RS02725 (JVX94_02725) comGB 515934..516974 (+) 1041 WP_144484630.1 competence type IV pilus assembly protein ComGB -
  JVX94_RS02730 (JVX94_02730) comGC 516991..517284 (+) 294 WP_024422977.1 competence type IV pilus major pilin ComGC Machinery gene
  JVX94_RS02735 (JVX94_02735) comGD 517277..517723 (+) 447 WP_205184480.1 competence type IV pilus minor pilin ComGD -
  JVX94_RS19650 comGE 517707..518021 (+) 315 WP_144484624.1 competence type IV pilus minor pilin ComGE -
  JVX94_RS02740 (JVX94_02740) comGF 517933..518460 (+) 528 WP_186437312.1 competence type IV pilus minor pilin ComGF -
  JVX94_RS02745 (JVX94_02745) comGG 518457..518840 (+) 384 WP_205184482.1 competence type IV pilus minor pilin ComGG -
  JVX94_RS02750 (JVX94_02750) - 518900..519094 (+) 195 WP_024718846.1 YqzE family protein -
  JVX94_RS02755 (JVX94_02755) - 519128..519406 (-) 279 WP_223251017.1 DUF3889 domain-containing protein -
  JVX94_RS02760 (JVX94_02760) tapA 519706..520233 (+) 528 WP_095408998.1 amyloid fiber anchoring/assembly protein TapA -
  JVX94_RS02765 (JVX94_02765) - 520286..520858 (+) 573 WP_205184484.1 signal peptidase I -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40470.96 Da        Isoelectric Point: 9.4799

>NTDB_id=539272 JVX94_RS02720 WP_240193794.1 514883..515953(+) (comGA) [Bacillus sp. PDNC022]
MYGIEYLRQELLEEACRMRASDVHIVPKEKEASVSFRVDSDLIQQRTIDKKSGERLIAHFKFLSSMDIGEKRRPQNGSLA
VMLRKGQVFIRMSTLPTVNDESLVIRILPQDHVPKIKHLSLFPKASTRLLSFLKHSHGLILFTGPTNSGKTTTLYSLIQF
AKKNFNRNIITLEDPVETRNEEVLQVQVNEKAGITYAAGLRAILRHDPDMIVLGEIRDAETARTAIRAALTGHLVLSTLH
AKNAKGALYRMLEFGVTMNELEQTMVAIAAQRLIELICPFCGETCQLYCKLNRPYRRTNVFELLYGKELGDCIKEAKGEY
AHSSYETLQRLIRKGVALGYLSKSTYHRWVYEEASL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=539272 JVX94_RS02720 WP_240193794.1 514883..515953(+) (comGA) [Bacillus sp. PDNC022]
TTGTATGGGATTGAATATTTAAGGCAAGAGCTGCTAGAAGAAGCATGCCGCATGAGGGCTTCTGATGTGCATATTGTGCC
AAAAGAAAAGGAAGCTTCGGTGTCTTTCCGTGTTGACTCAGATTTAATCCAGCAGCGAACGATTGATAAAAAAAGCGGAG
AGAGGCTTATTGCACATTTTAAATTTTTATCTTCTATGGATATCGGGGAAAAAAGGAGACCGCAAAATGGCTCACTAGCT
GTGATGCTAAGAAAAGGACAAGTGTTTATTCGGATGTCTACCTTGCCGACAGTGAATGATGAGAGCTTAGTGATTAGAAT
TTTACCGCAGGATCATGTTCCGAAAATAAAACATCTATCATTATTTCCGAAAGCCTCAACTAGATTATTATCATTTTTGA
AGCATTCGCATGGACTCATTTTATTTACTGGGCCAACAAATTCAGGGAAAACAACAACACTATATTCATTAATCCAGTTT
GCAAAAAAGAATTTTAATCGAAATATTATTACCCTTGAAGACCCTGTCGAAACGAGGAATGAAGAAGTGTTACAGGTTCA
AGTGAATGAAAAAGCCGGCATCACGTATGCCGCTGGATTACGCGCTATTTTAAGACATGATCCAGATATGATTGTGCTGG
GAGAAATAAGAGATGCGGAAACGGCTAGAACGGCGATTAGGGCAGCACTGACAGGCCATTTAGTATTGAGTACGCTTCAT
GCAAAAAATGCAAAAGGAGCCCTTTACCGCATGCTTGAATTTGGTGTGACGATGAATGAACTCGAACAAACCATGGTTGC
GATTGCTGCCCAGCGATTAATTGAGCTTATATGCCCTTTTTGCGGGGAAACATGTCAGCTTTACTGTAAATTAAATCGTC
CTTACAGACGAACAAATGTATTTGAATTGCTTTATGGAAAGGAGCTTGGTGATTGTATCAAAGAGGCCAAAGGAGAATAC
GCTCATTCGTCATACGAAACACTACAAAGATTAATTCGGAAAGGAGTGGCACTCGGTTATTTATCAAAAAGCACATATCA
TCGCTGGGTTTATGAAGAAGCGAGCCTCTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

64.972

99.438

0.646