Detailed information
Bioinformatically predicted
Overview
| Name | comB10 | Type | Machinery gene |
| Locus tag | LK447_RS00025 | Genome accession | NZ_CP085947 |
| Coordinates | 4761..5996 (+) | Length | 411 a.a. |
| NCBI ID | WP_000734985.1 | Uniprot ID | B5Z821 |
| Organism | Helicobacter pylori strain FDAARGOS_1563 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1..10996
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LK447_RS00010 (LK447_00010) | - | 173..2107 (+) | 1935 | WP_041201379.1 | type IA DNA topoisomerase | - |
| LK447_RS07940 | - | 2107..2235 (+) | 129 | WP_001185489.1 | hypothetical protein | - |
| LK447_RS00015 (LK447_00015) | - | 2237..3223 (+) | 987 | WP_000416483.1 | VirB8/TrbF family protein | - |
| LK447_RS00020 (LK447_00020) | - | 3223..4764 (+) | 1542 | WP_000714791.1 | TrbG/VirB9 family P-type conjugative transfer protein | - |
| LK447_RS00025 (LK447_00025) | comB10 | 4761..5996 (+) | 1236 | WP_000734985.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| LK447_RS00030 (LK447_00030) | - | 6066..6362 (+) | 297 | WP_000773933.1 | hypothetical protein | - |
| LK447_RS00035 (LK447_00035) | - | 6352..6615 (+) | 264 | WP_000578855.1 | hypothetical protein | - |
| LK447_RS00040 (LK447_00040) | - | 6612..6910 (+) | 299 | Protein_8 | hypothetical protein | - |
| LK447_RS00045 (LK447_00045) | - | 6910..7851 (+) | 942 | WP_000625134.1 | CpaF/VirB11 family protein | - |
| LK447_RS00050 (LK447_00050) | - | 7848..8303 (+) | 456 | WP_000795414.1 | hypothetical protein | - |
| LK447_RS00055 (LK447_00055) | - | 8300..8590 (+) | 291 | WP_000159819.1 | hypothetical protein | - |
| LK447_RS00060 (LK447_00060) | - | 8591..9148 (+) | 558 | WP_001167793.1 | hypothetical protein | - |
| LK447_RS00065 (LK447_00065) | - | 9149..10876 (+) | 1728 | WP_001208197.1 | type IV secretory system conjugative DNA transfer family protein | - |
Sequence
Protein
Download Length: 411 a.a. Molecular weight: 46456.50 Da Isoelectric Point: 10.0077
>NTDB_id=539271 LK447_RS00025 WP_000734985.1 4761..5996(+) (comB10) [Helicobacter pylori strain FDAARGOS_1563]
MKKLLLLLEHKIIKIGLIIVIVLAGFFLFYEQEIKEKAVNVSQGKFPTSSYLFQAYEGIKNKIDTINEVKPNDETKSVNE
NIEKTQKDLDDFNALVQKLPNLPKDFNKTLIKPQSPSFNYNTANEEEKTRLVILASRISSQKETQPPTSIKNSVSNTKSK
EKQELEKEYGSSGFKNFKRKNVASSENKLLRTITADRMIPAILITPISSEIGGSKIIAQVESDIYATMGRAVLIPKGSRA
IGYYNSNNKIGEYRLEIAWNRIITPQGVNIILSDAKGADVKGYNGMIGTLHNKYWERYGIPLSLSTLSNGLLIGLTSGLT
EAMKNKRGGFNQNYFGDYMMMQMTRQTGISLNNIIAQIMRDQIRIKPIITIREGSHIFISPNTDIWFPIPKNNEILAKFF
NEEKEQNNDTK
MKKLLLLLEHKIIKIGLIIVIVLAGFFLFYEQEIKEKAVNVSQGKFPTSSYLFQAYEGIKNKIDTINEVKPNDETKSVNE
NIEKTQKDLDDFNALVQKLPNLPKDFNKTLIKPQSPSFNYNTANEEEKTRLVILASRISSQKETQPPTSIKNSVSNTKSK
EKQELEKEYGSSGFKNFKRKNVASSENKLLRTITADRMIPAILITPISSEIGGSKIIAQVESDIYATMGRAVLIPKGSRA
IGYYNSNNKIGEYRLEIAWNRIITPQGVNIILSDAKGADVKGYNGMIGTLHNKYWERYGIPLSLSTLSNGLLIGLTSGLT
EAMKNKRGGFNQNYFGDYMMMQMTRQTGISLNNIIAQIMRDQIRIKPIITIREGSHIFISPNTDIWFPIPKNNEILAKFF
NEEKEQNNDTK
Nucleotide
Download Length: 1236 bp
>NTDB_id=539271 LK447_RS00025 WP_000734985.1 4761..5996(+) (comB10) [Helicobacter pylori strain FDAARGOS_1563]
ATGAAAAAACTTCTTTTACTTTTAGAGCATAAAATCATAAAAATTGGCTTAATTATTGTGATTGTATTAGCTGGTTTTTT
TCTTTTTTACGAACAAGAAATCAAAGAAAAAGCTGTTAATGTTTCTCAAGGTAAATTCCCTACTTCATCTTATTTGTTTC
AAGCTTACGAAGGCATTAAGAATAAAATAGATACTATCAATGAAGTGAAACCAAACGATGAAACTAAAAGCGTTAATGAG
AATATAGAAAAAACACAAAAAGATTTAGATGATTTTAATGCTCTAGTGCAAAAATTACCAAATTTGCCTAAGGATTTTAA
TAAAACGCTTATTAAACCACAAAGTCCATCCTTCAACTACAATACCGCTAATGAAGAAGAAAAAACCCGCCTTGTGATTT
TGGCGTCTCGTATTAGCAGTCAAAAAGAAACGCAACCTCCAACCTCTATAAAAAATAGTGTTTCTAACACAAAATCCAAA
GAAAAACAAGAACTTGAAAAAGAATACGGCTCTAGCGGTTTTAAAAATTTTAAAAGAAAAAATGTAGCGAGCAGTGAAAA
CAAACTTTTGAGAACGATTACAGCTGACAGAATGATCCCAGCCATTCTGATCACTCCTATTAGCAGTGAAATAGGGGGGA
GTAAGATAATCGCTCAAGTGGAGAGTGATATATACGCAACGATGGGTAGAGCGGTTTTAATCCCCAAAGGGAGTAGAGCC
ATAGGCTATTACAACTCTAATAACAAAATAGGAGAATACCGCTTAGAAATTGCTTGGAATAGGATAATCACGCCACAAGG
GGTTAATATCATACTAAGCGATGCTAAGGGAGCTGATGTCAAGGGCTATAACGGCATGATAGGAACACTCCATAACAAAT
ATTGGGAACGCTATGGTATTCCTTTATCCTTAAGCACCTTGTCAAATGGGCTACTCATAGGTCTTACTAGCGGTCTTACC
GAAGCGATGAAAAACAAAAGGGGTGGTTTTAACCAAAACTATTTTGGAGATTACATGATGATGCAAATGACGAGGCAAAC
TGGTATCAGCCTAAATAACATTATCGCTCAAATCATGCGAGATCAAATCAGGATTAAGCCCATTATCACTATTAGAGAGG
GAAGCCATATTTTTATTAGTCCTAATACGGATATTTGGTTTCCTATCCCTAAAAACAATGAGATCTTAGCGAAATTTTTT
AATGAAGAAAAGGAGCAAAACAATGATACAAAATAG
ATGAAAAAACTTCTTTTACTTTTAGAGCATAAAATCATAAAAATTGGCTTAATTATTGTGATTGTATTAGCTGGTTTTTT
TCTTTTTTACGAACAAGAAATCAAAGAAAAAGCTGTTAATGTTTCTCAAGGTAAATTCCCTACTTCATCTTATTTGTTTC
AAGCTTACGAAGGCATTAAGAATAAAATAGATACTATCAATGAAGTGAAACCAAACGATGAAACTAAAAGCGTTAATGAG
AATATAGAAAAAACACAAAAAGATTTAGATGATTTTAATGCTCTAGTGCAAAAATTACCAAATTTGCCTAAGGATTTTAA
TAAAACGCTTATTAAACCACAAAGTCCATCCTTCAACTACAATACCGCTAATGAAGAAGAAAAAACCCGCCTTGTGATTT
TGGCGTCTCGTATTAGCAGTCAAAAAGAAACGCAACCTCCAACCTCTATAAAAAATAGTGTTTCTAACACAAAATCCAAA
GAAAAACAAGAACTTGAAAAAGAATACGGCTCTAGCGGTTTTAAAAATTTTAAAAGAAAAAATGTAGCGAGCAGTGAAAA
CAAACTTTTGAGAACGATTACAGCTGACAGAATGATCCCAGCCATTCTGATCACTCCTATTAGCAGTGAAATAGGGGGGA
GTAAGATAATCGCTCAAGTGGAGAGTGATATATACGCAACGATGGGTAGAGCGGTTTTAATCCCCAAAGGGAGTAGAGCC
ATAGGCTATTACAACTCTAATAACAAAATAGGAGAATACCGCTTAGAAATTGCTTGGAATAGGATAATCACGCCACAAGG
GGTTAATATCATACTAAGCGATGCTAAGGGAGCTGATGTCAAGGGCTATAACGGCATGATAGGAACACTCCATAACAAAT
ATTGGGAACGCTATGGTATTCCTTTATCCTTAAGCACCTTGTCAAATGGGCTACTCATAGGTCTTACTAGCGGTCTTACC
GAAGCGATGAAAAACAAAAGGGGTGGTTTTAACCAAAACTATTTTGGAGATTACATGATGATGCAAATGACGAGGCAAAC
TGGTATCAGCCTAAATAACATTATCGCTCAAATCATGCGAGATCAAATCAGGATTAAGCCCATTATCACTATTAGAGAGG
GAAGCCATATTTTTATTAGTCCTAATACGGATATTTGGTTTCCTATCCCTAAAAACAATGAGATCTTAGCGAAATTTTTT
AATGAAGAAAAGGAGCAAAACAATGATACAAAATAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB10 | Helicobacter pylori P1 |
54.828 |
70.56 |
0.387 |