Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   LK450_RS08965 Genome accession   NZ_CP085939
Coordinates   1816503..1816961 (+) Length   152 a.a.
NCBI ID   WP_003031754.1    Uniprot ID   -
Organism   Streptococcus anginosus subsp. anginosus strain FDAARGOS_1569     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1811503..1821961
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK450_RS08950 (LK450_08950) - 1812794..1814692 (+) 1899 WP_003031802.1 sucrose-specific PTS transporter subunit IIBC -
  LK450_RS08955 (LK450_08955) scrK 1814968..1815867 (+) 900 WP_018543579.1 fructokinase ScrK -
  LK450_RS08960 (LK450_08960) - 1815935..1816345 (+) 411 WP_003031760.1 peptide deformylase -
  LK450_RS08965 (LK450_08965) rcrR 1816503..1816961 (+) 459 WP_003031754.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  LK450_RS08970 (LK450_08970) rcrP 1816954..1818720 (+) 1767 WP_003031770.1 ABC transporter ATP-binding protein Regulator
  LK450_RS08975 (LK450_08975) rcrQ 1818710..1820470 (+) 1761 WP_003031741.1 ABC transporter ATP-binding protein Regulator
  LK450_RS08980 (LK450_08980) - 1820680..1820994 (+) 315 WP_003031794.1 PTS cellobiose transporter subunit IIB -
  LK450_RS08985 (LK450_08985) - 1821005..1821325 (+) 321 WP_003031767.1 PTS cellobiose transporter subunit IIA -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17907.90 Da        Isoelectric Point: 7.8790

>NTDB_id=539266 LK450_RS08965 WP_003031754.1 1816503..1816961(+) (rcrR) [Streptococcus anginosus subsp. anginosus strain FDAARGOS_1569]
MEKPLLEFKRFGRKTHLMIQKIAKERGIEFMAGPQGQVLHFVNHREDCDKMTFIKDIEQELGITKSVASNLMKRMVKNGL
IYLEVSETDKRAKIIRLTPESKERMNKIRDFFDEMDRCLLTDISEEDLVTFFQVMGKFYQNIEKLEKGEANV

Nucleotide


Download         Length: 459 bp        

>NTDB_id=539266 LK450_RS08965 WP_003031754.1 1816503..1816961(+) (rcrR) [Streptococcus anginosus subsp. anginosus strain FDAARGOS_1569]
ATGGAAAAACCATTATTGGAATTCAAGCGATTTGGACGAAAAACACATCTAATGATTCAAAAAATTGCCAAAGAGCGAGG
AATTGAATTTATGGCGGGTCCGCAGGGGCAGGTATTGCATTTTGTGAATCACCGCGAAGACTGTGATAAGATGACCTTTA
TTAAAGATATTGAGCAGGAGTTGGGCATTACTAAGTCCGTTGCCAGTAATTTAATGAAGCGGATGGTGAAGAATGGCTTG
ATTTATCTGGAAGTGAGTGAGACCGATAAACGCGCTAAGATTATTCGTTTAACGCCGGAATCAAAAGAGCGCATGAATAA
AATTCGTGATTTTTTTGATGAAATGGATCGTTGCCTATTGACAGATATTTCAGAAGAAGATTTGGTTACTTTTTTTCAAG
TGATGGGGAAATTTTACCAGAATATTGAAAAATTAGAAAAAGGAGAAGCGAATGTTTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(33-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

43.836

96.053

0.421