Detailed information    

insolico Bioinformatically predicted

Overview


Name   kpsS   Type   Regulator
Locus tag   A911_RS06980 Genome accession   NC_018709
Coordinates   1344567..1345751 (-) Length   394 a.a.
NCBI ID   WP_002890768.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni PT14     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context


Location: 1339567..1350751
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A911_RS06955 (A911_06850) fliL 1340715..1341251 (+) 537 WP_002855429.1 flagellar basal body-associated protein FliL -
  A911_RS06960 (A911_06855) acpS 1341251..1341598 (+) 348 WP_002825806.1 holo-ACP synthase -
  A911_RS06965 (A911_06860) - 1341599..1342018 (-) 420 WP_002855518.1 hypothetical protein -
  A911_RS06970 (A911_06865) - 1342015..1343376 (-) 1362 WP_002890764.1 cytochrome P450 -
  A911_RS06975 (A911_06870) - 1343373..1344494 (-) 1122 WP_002890766.1 hypothetical protein -
  A911_RS06980 (A911_06875) kpsS 1344567..1345751 (-) 1185 WP_002890768.1 capsule polysaccharide modification protein KpsS Regulator
  A911_RS06985 (A911_06880) kpsC 1345748..1347817 (-) 2070 WP_002903881.1 capsular polysaccharide biosynthesis protein -
  A911_RS06990 (A911_06885) cysC 1347814..1348326 (-) 513 WP_002903883.1 cytidine diphosphoramidate kinase -
  A911_RS06995 (A911_06890) - 1348316..1349077 (-) 762 WP_002875234.1 CTP:phosphoglutamine cytidylyltransferase -
  A911_RS07000 (A911_06895) - 1349079..1349681 (-) 603 WP_002860377.1 gamma-glutamyl-CDP-amidate hydrolase -

Sequence


Protein


Download         Length: 394 a.a.        Molecular weight: 46854.60 Da        Isoelectric Point: 9.9369

>NTDB_id=53925 A911_RS06980 WP_002890768.1 1344567..1345751(-) (kpsS) [Campylobacter jejuni subsp. jejuni PT14]
MRFSTKIKKEFSGKNVLLLQGPVGNFFHHLAIKMKKKQTKVFKLNFNGGDFFFYPSGTRCKCDEKDLENFYRDFFQSKKI
DAILMYNDCRIIHTKAIKVAKELGIEIWIFEEGYLRPYCITLEKDGVNANSSLPRDKNFYLSQNIFTKESIKEIPGGFKF
MAFDAFLYWLFAFILAPFFNNKLHHRTLYPFEFLFWFRSLYRKYLYKITEKKLNEKIYNLEKKYFLAILQVYSDTQIKYH
YKKSIEHFIEETILSFANHARAKSYLVFKHHPMDRGYKNYSKLINDLSQKYHVEGRVLYVHDTHLPVLLRKALGCITINS
TVGLSAILEGCPTKVCGNAFYDFEGLSYPKKLQFFWREAHAYKPNPVLVCNFKKYLLQTNQFNGNFYKNFFLDK

Nucleotide


Download         Length: 1185 bp        

>NTDB_id=53925 A911_RS06980 WP_002890768.1 1344567..1345751(-) (kpsS) [Campylobacter jejuni subsp. jejuni PT14]
ATGAGATTTAGCACTAAAATTAAAAAAGAATTTAGCGGTAAAAATGTTTTACTCTTGCAAGGGCCTGTGGGAAATTTTTT
TCATCATCTTGCAATAAAAATGAAAAAAAAACAAACCAAAGTTTTTAAACTCAATTTTAACGGTGGAGATTTTTTTTTCT
ATCCTAGTGGAACGAGGTGTAAGTGCGATGAAAAAGATCTTGAAAATTTCTATAGAGATTTTTTTCAAAGCAAAAAAATC
GATGCTATTTTAATGTATAATGATTGTCGCATTATACATACTAAGGCTATTAAAGTGGCTAAAGAATTAGGAATTGAAAT
ATGGATTTTTGAAGAAGGATATTTAAGGCCTTATTGTATTACTTTGGAAAAAGATGGAGTGAATGCAAATTCTTCTTTAC
CGCGTGATAAAAATTTTTATCTTTCTCAAAATATTTTTACCAAAGAAAGCATAAAAGAAATTCCAGGTGGATTTAAATTT
ATGGCTTTTGATGCTTTTTTGTATTGGTTGTTTGCTTTTATTTTGGCTCCATTTTTTAACAACAAACTTCATCATCGCAC
TTTATATCCTTTTGAATTTTTATTTTGGTTTAGATCATTGTATAGAAAGTATCTTTATAAGATTACAGAAAAAAAACTAA
ATGAAAAGATTTATAATTTAGAAAAAAAGTACTTTTTGGCGATTTTACAAGTTTATAGCGATACGCAAATTAAATATCAT
TACAAAAAAAGCATAGAGCACTTTATAGAGGAAACCATACTTTCTTTTGCAAACCATGCAAGAGCTAAATCTTATCTAGT
TTTTAAACACCATCCCATGGATAGGGGCTATAAGAATTATTCTAAACTCATAAATGATTTAAGTCAAAAATATCATGTAG
AAGGAAGGGTTTTATATGTTCATGATACCCACTTGCCAGTTCTTTTAAGAAAGGCTTTGGGTTGTATTACTATAAATTCA
ACAGTAGGCCTTAGTGCTATTTTAGAAGGCTGTCCGACTAAGGTTTGTGGCAATGCTTTTTATGATTTTGAAGGCTTATC
TTATCCAAAAAAACTTCAATTTTTTTGGCGTGAAGCTCATGCTTATAAACCCAATCCTGTTTTAGTATGTAATTTTAAAA
AATATCTTTTACAAACTAATCAATTCAACGGCAATTTTTATAAAAATTTCTTTTTAGACAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

97.97

100

0.98


Multiple sequence alignment