Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   JTF64_RS27025 Genome accession   NZ_CP070339
Coordinates   5304416..5304874 (-) Length   152 a.a.
NCBI ID   WP_000804864.1    Uniprot ID   -
Organism   Bacillus cereus strain VKM B-370     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 5299416..5309874
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JTF64_RS27000 (JTF64_26955) - 5299579..5301120 (-) 1542 WP_000449901.1 MDR family MFS transporter -
  JTF64_RS27005 (JTF64_26960) - 5301524..5302024 (+) 501 WP_000708116.1 hypothetical protein -
  JTF64_RS27010 (JTF64_26965) - 5302057..5302290 (-) 234 WP_000939448.1 SPP1 phage holin family protein -
  JTF64_RS27015 (JTF64_26970) - 5302454..5303107 (+) 654 WP_000680814.1 diguanylate cyclase -
  JTF64_RS27020 (JTF64_26975) - 5303722..5304384 (+) 663 WP_000922470.1 YkyA family protein -
  JTF64_RS27025 (JTF64_26980) kre 5304416..5304874 (-) 459 WP_000804864.1 YkyB family protein Regulator
  JTF64_RS27030 (JTF64_26985) - 5305016..5306590 (+) 1575 WP_003279790.1 Ppx/GppA family phosphatase -
  JTF64_RS27035 (JTF64_26990) - 5306699..5308807 (+) 2109 WP_000423553.1 polyphosphate kinase -
  JTF64_RS27040 (JTF64_26995) - 5308968..5309204 (-) 237 WP_000283738.1 hypothetical protein -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17757.49 Da        Isoelectric Point: 10.6793

>NTDB_id=539244 JTF64_RS27025 WP_000804864.1 5304416..5304874(-) (kre) [Bacillus cereus strain VKM B-370]
MKPSQPQSQLQNQHSINRLAQSIFVVNRHAKAATNPKYLYWLKKTALERLIAEKKAIKEGLHFSRNPRFSQQQSDVLIRL
GDYFFHIPPTKEDFRILPHLGHLESSYRNPKTTLSLTVAKKTLQDYIGPEALKQEKKLSEPVPWYSRTYTKK

Nucleotide


Download         Length: 459 bp        

>NTDB_id=539244 JTF64_RS27025 WP_000804864.1 5304416..5304874(-) (kre) [Bacillus cereus strain VKM B-370]
ATGAAACCTTCACAACCACAATCTCAATTACAAAACCAACATTCTATTAATCGACTAGCTCAATCTATTTTCGTTGTGAA
TCGTCATGCTAAAGCAGCTACTAATCCTAAATATTTATACTGGTTAAAAAAGACAGCTTTAGAGCGTTTGATTGCTGAAA
AAAAAGCAATTAAAGAAGGATTACATTTTTCTAGAAACCCACGTTTTAGCCAACAACAATCTGATGTCCTTATACGTTTA
GGCGATTATTTTTTCCACATCCCTCCTACGAAAGAAGATTTTCGAATTCTACCGCATCTTGGTCATCTTGAATCCTCCTA
TCGAAATCCGAAAACAACCTTATCTTTAACAGTAGCAAAAAAAACACTTCAAGATTATATTGGGCCTGAAGCATTGAAAC
AAGAAAAAAAATTAAGTGAACCGGTTCCATGGTATAGTCGTACTTATACAAAAAAATAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(16-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

64.655

76.316

0.493