Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   JTF64_RS26135 Genome accession   NZ_CP070339
Coordinates   5142702..5143496 (+) Length   264 a.a.
NCBI ID   WP_142339324.1    Uniprot ID   -
Organism   Bacillus cereus strain VKM B-370     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 5137702..5148496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JTF64_RS26120 (JTF64_26075) argR 5138542..5138991 (+) 450 WP_001032580.1 arginine repressor ArgR -
  JTF64_RS26125 (JTF64_26080) recN 5139256..5140995 (+) 1740 WP_000947759.1 DNA repair protein RecN Machinery gene
  JTF64_RS26130 (JTF64_26085) spoIVB 5141114..5142412 (+) 1299 WP_015055189.1 SpoIVB peptidase -
  JTF64_RS26135 (JTF64_26090) spo0A 5142702..5143496 (+) 795 WP_142339324.1 sporulation transcription factor Spo0A Regulator
  JTF64_RS26140 (JTF64_26095) - 5143750..5144313 (+) 564 WP_000791083.1 PRK06770 family protein -
  JTF64_RS26145 (JTF64_26100) - 5144527..5144673 (-) 147 WP_001247671.1 YycC family protein -
  JTF64_RS26150 (JTF64_26105) - 5144724..5145452 (+) 729 WP_000172594.1 glycerophosphodiester phosphodiesterase -
  JTF64_RS26155 (JTF64_26110) - 5145502..5145735 (-) 234 WP_001190195.1 DUF2627 domain-containing protein -
  JTF64_RS26160 (JTF64_26115) - 5145872..5147944 (+) 2073 WP_205190440.1 sigma-54-dependent Fis family transcriptional regulator -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29397.21 Da        Isoelectric Point: 7.1175

>NTDB_id=539242 JTF64_RS26135 WP_142339324.1 5142702..5143496(+) (spo0A) [Bacillus cereus strain VKM B-370]
MEKIKVCLVDDNKELVSMLESYVAAQDDMEVIGTAYNGQECLNLLADKQPDVLVLDIIMPHLDGLAVLEKMRHIERLKQP
SVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLTSHIRQVSGKANAMIKRPLPSFRSAITVDGKPKNLDASITSIIHE
IGVPAHIKGYMYLREAISMVYNDIELLGSITKVLYPDIAKKYNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVSMS
KAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 795 bp        

>NTDB_id=539242 JTF64_RS26135 WP_142339324.1 5142702..5143496(+) (spo0A) [Bacillus cereus strain VKM B-370]
GTGGAGAAAATTAAAGTATGTCTTGTGGATGATAATAAAGAACTAGTATCAATGTTAGAGAGCTATGTAGCTGCTCAAGA
TGATATGGAAGTAATCGGTACTGCTTATAATGGTCAAGAGTGTTTAAACTTATTAGCAGATAAGCAACCTGATGTACTCG
TTTTAGACATTATTATGCCACACTTAGATGGTTTAGCTGTATTGGAAAAAATGCGACATATTGAAAGGTTAAAACAGCCT
AGCGTAATTATGTTGACAGCATTCGGGCAAGAAGATGTGACGAAAAAAGCAGTTGACTTAGGTGCCTCATATTTCATATT
AAAACCATTTGATATGGAGAATTTAACGAGTCATATTCGTCAAGTGAGTGGTAAAGCAAACGCTATGATTAAACGTCCAC
TACCATCATTCCGATCAGCAATAACAGTAGATGGAAAACCGAAAAACTTAGATGCGAGTATTACGAGTATCATTCATGAA
ATTGGTGTACCCGCTCATATTAAAGGATATATGTATTTACGAGAAGCAATCTCCATGGTATACAACGATATCGAATTATT
AGGATCGATTACGAAAGTATTGTATCCAGATATCGCAAAGAAATATAATACAACAGCAAGCCGTGTGGAGCGCGCAATTC
GTCACGCGATTGAAGTAGCGTGGAGCCGTGGGAATATTGATTCTATTTCGTCCTTATTCGGTTATACAGTATCCATGTCA
AAAGCAAAACCTACGAATTCTGAGTTTATCGCAATGGTTGCGGATAAGCTGAGACTTGAACATAAAGCTAGCTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-119)

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(154-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

80.899

100

0.818