Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   JTF64_RS19405 Genome accession   NZ_CP070339
Coordinates   3857751..3858035 (+) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus cereus strain VKM B-370     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3852751..3863035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JTF64_RS19390 (JTF64_19345) rnmV 3853575..3854132 (-) 558 WP_000692842.1 ribonuclease M5 -
  JTF64_RS19395 (JTF64_19350) - 3854348..3855115 (-) 768 WP_000895845.1 TatD family hydrolase -
  JTF64_RS19400 (JTF64_19355) metG 3855282..3857264 (-) 1983 WP_263978820.1 methionine--tRNA ligase -
  JTF64_RS19405 (JTF64_19360) abrB 3857751..3858035 (+) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  JTF64_RS19410 (JTF64_19365) rsmI 3858056..3858931 (-) 876 WP_000267816.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  JTF64_RS19415 (JTF64_19370) - 3858900..3859190 (-) 291 WP_000414350.1 GIY-YIG nuclease family protein -
  JTF64_RS19420 (JTF64_19375) - 3859177..3859917 (-) 741 WP_001055357.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  JTF64_RS19425 (JTF64_19380) yabA 3860000..3860350 (-) 351 WP_000412063.1 DNA replication initiation control protein YabA -
  JTF64_RS19430 (JTF64_19385) - 3860365..3861192 (-) 828 WP_000272429.1 stage 0 sporulation family protein -
  JTF64_RS19435 (JTF64_19390) holB 3861198..3862181 (-) 984 WP_000978578.1 DNA polymerase III subunit delta' -
  JTF64_RS19440 (JTF64_19395) tmk 3862217..3862843 (-) 627 WP_000677218.1 dTMP kinase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=539221 JTF64_RS19405 WP_000843036.1 3857751..3858035(+) (abrB) [Bacillus cereus strain VKM B-370]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=539221 JTF64_RS19405 WP_000843036.1 3857751..3858035(+) (abrB) [Bacillus cereus strain VKM B-370]
ATGAAATCTACTGGTATTGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGATGCTCTTGAAATCTATGTTGATGACGAGAAAATCATCTTAAAAAAATATAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGACGGTAACCTTTCTTTAGCTGAAGGTAAAATCATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851