Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   JTF64_RS13150 Genome accession   NZ_CP070339
Coordinates   2636380..2636703 (+) Length   107 a.a.
NCBI ID   WP_000578875.1    Uniprot ID   -
Organism   Bacillus cereus strain VKM B-370     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2631380..2641703
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JTF64_RS13135 (JTF64_13105) - 2631897..2633264 (-) 1368 WP_000028385.1 aldehyde dehydrogenase -
  JTF64_RS13140 (JTF64_13110) inhA1 2633436..2635823 (-) 2388 WP_001035950.1 M6 family metalloprotease immune inhibitor InhA1 -
  JTF64_RS13145 (JTF64_13115) - 2636166..2636300 (+) 135 WP_000276219.1 anti-repressor SinI family protein -
  JTF64_RS13150 (JTF64_13120) sinR 2636380..2636703 (+) 324 WP_000578875.1 helix-turn-helix domain-containing protein Regulator
  JTF64_RS13155 (JTF64_13125) calY 2636776..2637369 (-) 594 WP_000053713.1 biofilm matrix protein CalY -
  JTF64_RS13160 (JTF64_13130) - 2637757..2638599 (-) 843 WP_118961645.1 DUF4047 domain-containing protein -
  JTF64_RS13165 (JTF64_13135) - 2638734..2639321 (-) 588 WP_000172852.1 CalY family protein -
  JTF64_RS13170 (JTF64_13140) - 2639382..2639951 (-) 570 WP_000767804.1 signal peptidase I -
  JTF64_RS13175 (JTF64_13145) - 2640146..2641432 (-) 1287 WP_000247023.1 D-alanyl-D-alanine carboxypeptidase family protein -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12291.16 Da        Isoelectric Point: 9.9745

>NTDB_id=539206 JTF64_RS13150 WP_000578875.1 2636380..2636703(+) (sinR) [Bacillus cereus strain VKM B-370]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKATNLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=539206 JTF64_RS13150 WP_000578875.1 2636380..2636703(+) (sinR) [Bacillus cereus strain VKM B-370]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGCAACTAACCTAGACTCCGAATGGACACAACTCGTT
AAAGATGCAATGAACTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAGTGGAAGCAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692