Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   JTF64_RS11835 Genome accession   NZ_CP070339
Coordinates   2393979..2394581 (+) Length   200 a.a.
NCBI ID   WP_000155599.1    Uniprot ID   A0A9W5VMY9
Organism   Bacillus cereus strain VKM B-370     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2388979..2399581
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JTF64_RS11795 (JTF64_11765) gpsB 2389358..2389693 (-) 336 WP_000622431.1 cell division regulator GpsB -
  JTF64_RS11800 (JTF64_11770) - 2389791..2390345 (-) 555 WP_000862927.1 DUF1273 domain-containing protein -
  JTF64_RS11805 (JTF64_11775) - 2390402..2390824 (-) 423 WP_000546292.1 CotD family spore coat protein -
  JTF64_RS11810 (JTF64_11780) - 2390980..2391435 (-) 456 WP_205190536.1 YppG family protein -
  JTF64_RS11815 (JTF64_11785) - 2391613..2391804 (+) 192 WP_000242652.1 YppF family protein -
  JTF64_RS11820 (JTF64_11790) - 2391831..2392175 (-) 345 WP_079245304.1 YppE family protein -
  JTF64_RS11825 (JTF64_11795) - 2392191..2392433 (-) 243 WP_001252036.1 hypothetical protein -
  JTF64_RS29980 - 2392519..2392698 (+) 180 WP_003277508.1 hypothetical protein -
  JTF64_RS11830 (JTF64_11800) - 2392850..2393875 (-) 1026 WP_003277507.1 DUF2515 domain-containing protein -
  JTF64_RS11835 (JTF64_11805) recU 2393979..2394581 (+) 603 WP_000155599.1 Holliday junction resolvase RecU Machinery gene
  JTF64_RS11840 (JTF64_11810) - 2394647..2397349 (+) 2703 WP_001283103.1 PBP1A family penicillin-binding protein -
  JTF64_RS11845 (JTF64_11815) - 2397376..2397894 (-) 519 WP_000442661.1 YpoC family protein -
  JTF64_RS11850 (JTF64_11820) nth 2397898..2398545 (-) 648 WP_000933035.1 endonuclease III -
  JTF64_RS11855 (JTF64_11825) dnaD 2398561..2399268 (-) 708 WP_000728537.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23325.54 Da        Isoelectric Point: 9.4336

>NTDB_id=539204 JTF64_RS11835 WP_000155599.1 2393979..2394581(+) (recU) [Bacillus cereus strain VKM B-370]
MTIRYPNGKRYNQASQPQKTPIKTHTYSNRGMSLEEELNETNQYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVVAHNGIAFVIIKFTLFDEFYLLDAKHIIAFWNRQ
NTGGRKSITKEEIEEHGSLLSCGYHPRIDYIRVLDTVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=539204 JTF64_RS11835 WP_000155599.1 2393979..2394581(+) (recU) [Bacillus cereus strain VKM B-370]
ATGACCATTCGTTACCCAAATGGAAAAAGGTATAATCAAGCTTCACAACCTCAAAAAACACCTATAAAAACACATACTTA
TAGCAACAGAGGTATGTCCCTTGAAGAGGAATTGAATGAAACAAATCAATATTACTTAACCCATAATATTGCATGTGTAC
ATAAAAAACCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTT
AAACAACCTTCTACAACAGATTACAACGGTGTATACAAAGGGAAATACATCGATTTTGAAGCAAAGGAAACAAAAAATAA
AACTAGTTTCCCACTTCAAAACTTCCACCTTCATCAAATAGAACATATGAAGCAAGTGGTTGCTCATAATGGAATTGCAT
TTGTCATTATTAAATTTACACTTTTTGATGAATTTTATTTATTAGATGCAAAACATATTATTGCATTTTGGAATCGTCAA
AATACTGGTGGACGCAAGTCGATTACGAAAGAAGAAATAGAAGAGCATGGATCCTTATTATCATGCGGTTATCACCCTCG
GATTGACTATATCCGTGTACTAGACACGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

63.5

100

0.635