Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   JTF64_RS09855 Genome accession   NZ_CP070339
Coordinates   1989279..1989566 (-) Length   95 a.a.
NCBI ID   WP_000648324.1    Uniprot ID   -
Organism   Bacillus cereus strain VKM B-370     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1984279..1994566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JTF64_RS09815 (JTF64_09795) - 1984363..1984839 (-) 477 WP_001018103.1 DUF664 domain-containing protein -
  JTF64_RS09820 (JTF64_09800) - 1985036..1985383 (+) 348 WP_000426317.1 DUF4257 domain-containing protein -
  JTF64_RS09825 (JTF64_09805) - 1985468..1985692 (+) 225 WP_000162602.1 hypothetical protein -
  JTF64_RS29660 - 1985849..1986034 (-) 186 WP_206776841.1 hypothetical protein -
  JTF64_RS09835 (JTF64_09810) - 1986012..1986641 (-) 630 Protein_1976 MFS transporter -
  JTF64_RS09840 (JTF64_09815) - 1986666..1987601 (-) 936 WP_000877948.1 aldo/keto reductase -
  JTF64_RS09845 (JTF64_09820) - 1987708..1988016 (+) 309 WP_001259903.1 helix-turn-helix transcriptional regulator -
  JTF64_RS09850 (JTF64_09825) - 1988056..1989003 (-) 948 WP_000099758.1 serine protease -
  JTF64_RS09855 (JTF64_09830) abrB 1989279..1989566 (-) 288 WP_000648324.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  JTF64_RS09860 (JTF64_09835) - 1989682..1991562 (-) 1881 WP_063675241.1 ABC transporter permease -
  JTF64_RS09865 (JTF64_09840) nadE 1991838..1992656 (+) 819 WP_000174897.1 ammonia-dependent NAD(+) synthetase -
  JTF64_RS09870 (JTF64_09845) - 1992699..1993160 (-) 462 WP_000024996.1 NUDIX hydrolase -
  JTF64_RS09875 (JTF64_09850) - 1993189..1993386 (-) 198 WP_014894789.1 DUF4083 domain-containing protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10587.32 Da        Isoelectric Point: 4.8408

>NTDB_id=539203 JTF64_RS09855 WP_000648324.1 1989279..1989566(-) (abrB) [Bacillus cereus strain VKM B-370]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEADKIILQKYQPYNACQITGDVSEQNISLANGNITVGIEGAE
YLVKEIEKFLNKSEV

Nucleotide


Download         Length: 288 bp        

>NTDB_id=539203 JTF64_RS09855 WP_000648324.1 1989279..1989566(-) (abrB) [Bacillus cereus strain VKM B-370]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATCCCTAAAGAATTACGCGATGTATTGGG
AATACAAATCAAATCACCGCTTGAAATTTTTGTAGAAGCAGATAAAATCATTTTGCAAAAATATCAACCTTACAATGCTT
GCCAAATCACAGGTGATGTTTCAGAACAGAACATATCATTAGCAAATGGAAATATTACTGTTGGGATAGAGGGAGCGGAA
TATTTAGTAAAAGAAATAGAAAAGTTTTTAAACAAGAGTGAGGTTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.556

94.737

0.526