Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   JTF64_RS07580 Genome accession   NZ_CP070339
Coordinates   1547580..1547858 (-) Length   92 a.a.
NCBI ID   WP_000842214.1    Uniprot ID   A0A9W5VLT2
Organism   Bacillus cereus strain VKM B-370     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1542580..1552858
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JTF64_RS07565 (JTF64_07540) - 1543980..1544639 (-) 660 WP_000682536.1 CatB-related O-acetyltransferase -
  JTF64_RS07570 (JTF64_07545) - 1544892..1545650 (-) 759 WP_000347991.1 TSUP family transporter -
  JTF64_RS07575 (JTF64_07550) - 1545718..1546968 (-) 1251 WP_001032355.1 hypothetical protein -
  JTF64_RS07580 (JTF64_07555) abrB 1547580..1547858 (-) 279 WP_000842214.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  JTF64_RS07585 (JTF64_07560) - 1547999..1548877 (-) 879 WP_000397978.1 helix-turn-helix domain-containing protein -
  JTF64_RS07590 (JTF64_07565) - 1549255..1549506 (+) 252 WP_000821942.1 LuxR C-terminal-related transcriptional regulator -
  JTF64_RS07595 (JTF64_07570) - 1549647..1550252 (-) 606 WP_000527414.1 hypothetical protein -
  JTF64_RS07600 (JTF64_07575) - 1550278..1551087 (-) 810 WP_098832561.1 papain-like cysteine protease family protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10363.20 Da        Isoelectric Point: 9.6547

>NTDB_id=539201 JTF64_RS07580 WP_000842214.1 1547580..1547858(-) (abrB) [Bacillus cereus strain VKM B-370]
MKSRGITRKADSMGRIVIPMEIRRSLGIVEKDSLEMFIEEDQIILRKYQSPRACALTGDISDSNISLANGKIIVSPEGTE
LLIKKLQQYLLK

Nucleotide


Download         Length: 279 bp        

>NTDB_id=539201 JTF64_RS07580 WP_000842214.1 1547580..1547858(-) (abrB) [Bacillus cereus strain VKM B-370]
ATGAAATCAAGAGGGATTACTCGTAAAGCAGATAGCATGGGGCGTATTGTTATTCCAATGGAAATAAGACGGAGTTTAGG
AATTGTAGAAAAAGATTCTCTTGAAATGTTTATAGAAGAGGATCAGATTATTTTACGAAAATATCAATCTCCAAGAGCTT
GTGCACTTACAGGTGATATTTCAGACAGCAATATTTCGTTAGCGAATGGGAAGATTATTGTAAGTCCAGAGGGGACGGAA
CTATTAATAAAGAAGTTACAGCAATATCTTTTAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(9-52)

AbrB C-terminal domain (AbrB_C)

(53-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

51.111

97.826

0.5