Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JVY19_RS13145 Genome accession   NZ_CP070327
Coordinates   2619346..2620710 (+) Length   454 a.a.
NCBI ID   WP_273144736.1    Uniprot ID   A0A9E6SXI6
Organism   MAG: Ferrovum myxofaciens isolate MI1I     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2614346..2625710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JVY19_RS13115 (JVY19_13125) rlmB 2615671..2616429 (+) 759 WP_031595079.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  JVY19_RS13120 (JVY19_13130) rpsF 2616538..2616915 (+) 378 WP_035416863.1 30S ribosomal protein S6 -
  JVY19_RS13125 (JVY19_13135) priB 2616912..2617235 (+) 324 WP_051861737.1 primosomal replication protein N -
  JVY19_RS13130 (JVY19_13140) rpsR 2617222..2617494 (+) 273 WP_031595076.1 30S ribosomal protein S18 -
  JVY19_RS13135 (JVY19_13145) rplI 2617509..2617955 (+) 447 WP_031595075.1 50S ribosomal protein L9 -
  JVY19_RS13140 (JVY19_13150) dnaB 2617965..2619335 (+) 1371 WP_031595073.1 replicative DNA helicase -
  JVY19_RS13145 (JVY19_13155) radA 2619346..2620710 (+) 1365 WP_273144736.1 DNA repair protein RadA Machinery gene
  JVY19_RS13150 (JVY19_13160) - 2620686..2621429 (-) 744 WP_273144739.1 SDR family NAD(P)-dependent oxidoreductase -
  JVY19_RS13155 (JVY19_13165) - 2621608..2621799 (+) 192 WP_051861743.1 hypothetical protein -
  JVY19_RS13160 (JVY19_13170) hyfB 2621804..2623825 (+) 2022 WP_031595067.1 hydrogenase 4 subunit B -
  JVY19_RS13165 (JVY19_13175) - 2623822..2624769 (+) 948 WP_031595066.1 respiratory chain complex I subunit 1 family protein -
  JVY19_RS13170 (JVY19_13180) - 2624772..2625446 (+) 675 WP_031595063.1 formate hydrogenlyase -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 48457.67 Da        Isoelectric Point: 7.9400

>NTDB_id=539190 JVY19_RS13145 WP_273144736.1 2619346..2620710(+) (radA) [MAG: Ferrovum myxofaciens isolate MI1I]
MARAKSVFVCRECGGESPRWQGQCPHCQAWNTLAEFRTGEGKGSAQRSSLTSPSLVQPLHQVKAESLQRLSSGLPEFDRV
LGGGFVPGGVVLLGGDPGIGKSTLLLQSLAQVGKQHGVLYVTGEESPEQVAERARRLQLSGAAVDLLAETRLQAVEAVIR
ERQPQLVVIDSIQTLYSDALEAAPGSVSQVRDCAAQLTRLAKSGGPVMILVGHVTKEGTLAGPRILEHMVDTVLYFEGDG
SSSYRLIRAIKNRFGAVNELGVFGMTETGLREVSNPSALFMSRHAQPVSGSCATVTLEGTRPLAVEIQALLDESRMGIPR
RLTVGLEQNRLALLLAVLHRHAGVSCGDQDVFVNAVAGVRIGEPAADLAILLAIVSSLRNRPLPPGWVVFGEVGLAGEVR
PVQRGLERLREAAKLGFAVALIPRANAPRQIPDGIRLITVERVEEAVQAFRDGS

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=539190 JVY19_RS13145 WP_273144736.1 2619346..2620710(+) (radA) [MAG: Ferrovum myxofaciens isolate MI1I]
ATGGCCCGCGCCAAAAGTGTCTTCGTCTGTCGGGAATGCGGCGGGGAATCTCCGCGCTGGCAGGGCCAATGCCCCCATTG
TCAGGCATGGAATACCCTGGCCGAATTTCGGACCGGGGAAGGGAAAGGGAGTGCTCAACGCTCTTCCCTGACCTCGCCCT
CCTTGGTTCAGCCCCTCCATCAAGTCAAGGCCGAATCCTTGCAGCGCTTGTCCTCTGGGCTGCCGGAATTCGATCGGGTT
CTGGGCGGGGGATTCGTGCCGGGAGGGGTGGTATTGCTGGGCGGGGATCCGGGGATCGGCAAATCCACCCTTTTGTTGCA
ATCCCTGGCTCAGGTAGGAAAACAGCACGGTGTCCTGTATGTGACAGGGGAAGAATCCCCAGAGCAGGTGGCAGAGCGGG
CGCGTCGTCTGCAACTGTCGGGGGCTGCGGTGGATCTGTTGGCCGAAACGCGCTTGCAGGCAGTGGAAGCGGTGATTCGG
GAGCGCCAGCCGCAACTGGTGGTCATCGACTCCATACAAACCCTGTACAGCGATGCGCTGGAAGCTGCGCCGGGCTCGGT
ATCCCAGGTGCGTGACTGTGCGGCCCAACTGACGCGCCTGGCCAAGAGTGGCGGTCCGGTGATGATCCTGGTGGGGCATG
TCACCAAGGAGGGCACCTTGGCTGGTCCGCGTATCCTCGAGCATATGGTGGACACAGTGCTGTATTTCGAGGGGGATGGC
AGTTCCAGTTATCGTTTGATTCGCGCGATCAAGAACCGTTTTGGGGCGGTGAATGAATTGGGTGTCTTTGGGATGACCGA
GACGGGTTTGCGCGAAGTCAGCAATCCTTCCGCCTTGTTCATGTCCCGTCATGCACAACCGGTATCTGGTTCTTGCGCCA
CGGTGACCCTGGAAGGCACCCGCCCTCTGGCGGTGGAGATTCAGGCGCTGCTGGATGAGAGTCGGATGGGTATTCCGCGT
CGGCTCACGGTGGGACTGGAGCAAAATCGTCTGGCCCTGCTCCTGGCGGTGCTACATCGTCATGCTGGGGTGTCCTGTGG
GGACCAGGATGTCTTCGTCAATGCCGTGGCTGGGGTGAGGATTGGCGAACCTGCTGCGGATCTGGCCATCCTGTTGGCCA
TTGTCTCCAGTTTGCGCAATCGTCCCCTGCCGCCTGGTTGGGTGGTGTTTGGTGAAGTAGGGTTGGCGGGGGAGGTACGC
CCCGTTCAGCGTGGTCTGGAGCGCTTGCGCGAAGCTGCAAAGTTGGGTTTTGCGGTGGCTCTGATACCCCGTGCCAATGC
CCCTCGGCAGATACCCGACGGGATTCGTCTCATTACAGTGGAACGGGTCGAAGAAGCGGTTCAGGCTTTTCGGGATGGGT
CGTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(342-426)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(64-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.238

100

0.482
  radA Streptococcus mitis SK321

45.556

99.119

0.452
  radA Streptococcus mitis NCTC 12261

45.333

99.119

0.449
  radA Streptococcus pneumoniae TIGR4

45.212

98.899

0.447
  radA Streptococcus pneumoniae R6

45.212

98.899

0.447
  radA Streptococcus pneumoniae Rx1

45.212

98.899

0.447
  radA Streptococcus pneumoniae D39

45.212

98.899

0.447