Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   A911_RS05665 Genome accession   NC_018709
Coordinates   1081275..1082234 (+) Length   319 a.a.
NCBI ID   WP_002875425.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni PT14     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1061568..1094455 1081275..1082234 within 0


Gene organization within MGE regions


Location: 1061568..1094455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A911_RS05570 (A911_05465) pglI 1061568..1062497 (-) 930 WP_002890470.1 GalNAc(5)-diNAcBac-PP-undecaprenol beta-1,3-glucosyltransferase -
  A911_RS05575 (A911_05470) pglH 1062490..1063569 (-) 1080 WP_002859237.1 GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)- diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase -
  A911_RS05580 (A911_05475) pglK 1063566..1065260 (-) 1695 WP_002890469.1 ABC-type lipopolysaccharide transporter PglK -
  A911_RS05585 (A911_05480) galE 1065254..1066240 (-) 987 WP_002853529.1 UDP-glucose 4-epimerase GalE -
  A911_RS05590 (A911_05485) - 1066298..1067092 (-) 795 WP_002853812.1 3'-5' exonuclease -
  A911_RS05595 (A911_05490) waaC 1067158..1068186 (+) 1029 WP_002855693.1 lipopolysaccharide heptosyltransferase I -
  A911_RS05600 (A911_05495) htrB 1068176..1069063 (+) 888 WP_002890465.1 lipid A biosynthesis lauroyl acyltransferase HtrB -
  A911_RS05605 (A911_05500) - 1069060..1070607 (+) 1548 WP_002858148.1 glycosyltransferase -
  A911_RS05610 (A911_05505) - 1070611..1071783 (+) 1173 WP_002858013.1 glycosyltransferase family 2 protein -
  A911_RS05615 (A911_05510) - 1071767..1072762 (-) 996 WP_002858358.1 capsular polysaccharide synthesis protein -
  A911_RS05620 (A911_05515) - 1072820..1073989 (+) 1170 WP_002858320.1 glycosyltransferase family 2 protein -
  A911_RS05625 (A911_05520) wlaN 1073978..1074892 (-) 915 WP_015016469.1 beta-1,3 galactosyltransferase -
  A911_RS05630 (A911_05525) cstIII 1074947..1075831 (+) 885 WP_002858290.1 alpha-2,3-sialyltransferase -
  A911_RS05635 (A911_05530) neuB1 1075812..1076843 (+) 1032 WP_002858213.1 sialic acid synthase -
  A911_RS05640 (A911_05535) neuC 1076840..1077955 (+) 1116 WP_002858400.1 UDP-N-acetylglucosamine 2-epimerase -
  A911_RS08950 - 1077952..1078866 (+) 915 Protein_1080 beta-1,4-N-acetylgalactosaminyltransferase -
  A911_RS08955 - 1078900..1079562 (+) 663 WP_002881429.1 N-acylneuraminate cytidylyltransferase -
  A911_RS05655 (A911_05550) - 1079557..1080408 (-) 852 WP_043020460.1 glycosyltransferase -
  A911_RS05660 (A911_05555) waaV 1080392..1081216 (-) 825 WP_002858096.1 glycosyltransferase family 2 protein -
  A911_RS05665 (A911_05560) waaF 1081275..1082234 (+) 960 WP_002875425.1 lipopolysaccharide heptosyltransferase II Regulator
  A911_RS05670 (A911_05565) gmhA 1082215..1082775 (-) 561 WP_002858021.1 D-sedoheptulose 7-phosphate isomerase -
  A911_RS05675 (A911_05570) rfaE1 1082772..1084157 (-) 1386 WP_002890180.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -
  A911_RS05680 (A911_05575) rfaD 1084150..1085103 (-) 954 WP_002852832.1 ADP-glyceromanno-heptose 6-epimerase -
  A911_RS05685 (A911_05580) gmhB 1085104..1085664 (-) 561 WP_002878815.1 D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase -
  A911_RS05690 (A911_05585) - 1085746..1086048 (+) 303 WP_002852762.1 cytochrome c -
  A911_RS05695 (A911_05590) ccoS 1086071..1086277 (-) 207 WP_002852798.1 cbb3-type cytochrome oxidase assembly protein CcoS -
  A911_RS05700 (A911_05595) - 1086274..1088631 (-) 2358 WP_072224466.1 heavy metal translocating P-type ATPase -
  A911_RS05705 (A911_05600) rho 1088740..1090038 (+) 1299 WP_002852852.1 transcription termination factor Rho -
  A911_RS05710 (A911_05605) dnaX 1090042..1091571 (+) 1530 WP_002875420.1 DNA polymerase III subunit gamma/tau -
  A911_RS05715 (A911_05610) - 1091568..1091795 (-) 228 WP_002868592.1 DUF2165 family protein -
  A911_RS05725 (A911_05620) - 1091911..1092090 (-) 180 WP_002868591.1 DUF2165 family protein -
  A911_RS05730 (A911_05625) copA 1092162..1094261 (-) 2100 WP_015016470.1 copper-translocating P-type ATPase CopA -
  A911_RS05735 (A911_05630) - 1094261..1094455 (-) 195 WP_002859258.1 hypothetical protein -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 36734.30 Da        Isoelectric Point: 10.2412

>NTDB_id=53918 A911_RS05665 WP_002875425.1 1081275..1082234(+) (waaF) [Campylobacter jejuni subsp. jejuni PT14]
MKIFIHLPTWLGDTVMASPALYTIKEHFKDAQFILYGSFVSTALFKEFPNSKIIIENKLSRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKYKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLILRNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHDILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHLSAVYKVKTVAIFGPTKFTQTSPWQNENAKLVHLDLACMPCMQKTCPLKHHKCMKDLKPEKVIEQAKNLLKNSHL

Nucleotide


Download         Length: 960 bp        

>NTDB_id=53918 A911_RS05665 WP_002875425.1 1081275..1082234(+) (waaF) [Campylobacter jejuni subsp. jejuni PT14]
ATGAAAATTTTTATACATCTTCCCACCTGGTTAGGCGATACGGTAATGGCTTCACCTGCTTTATACACTATAAAAGAACA
TTTTAAAGATGCTCAGTTTATCCTTTATGGTTCTTTTGTTTCTACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACTATCCCGTTATAAACAAGCTCTATCTTTACGCAAAGAACTTGGTAAAATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTCTCTTCTAAGATTATCTTGCATATCCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGTA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAATTCACTTAGTATAAAAGCTCATTTTAAGGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTATCTTAAGAAATGGTAAAAAAATTCTAGGACTCAACCCTGGTGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGATATTTT
AATCTTTGGTGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGACCTATGCACCTAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATGAAAATGCAAAATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATCTAAAGCCTGAAAAAGTGATAGAACAGGCTAAAAATTTACTTAAAAACTCTCATCTATGA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(94-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1

Multiple sequence alignment