Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   LK450_RS02560 Genome accession   NZ_CP085939
Coordinates   516738..517808 (+) Length   356 a.a.
NCBI ID   WP_018543480.1    Uniprot ID   -
Organism   Streptococcus anginosus subsp. anginosus strain FDAARGOS_1569     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 511738..522808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK450_RS02540 (LK450_02540) - 513373..514071 (+) 699 WP_022524397.1 GntR family transcriptional regulator -
  LK450_RS02545 (LK450_02545) - 514187..514519 (+) 333 WP_003031055.1 putative DNA-binding protein -
  LK450_RS02550 (LK450_02550) ffh 514592..516142 (+) 1551 WP_003031052.1 signal recognition particle protein -
  LK450_RS02555 (LK450_02555) - 516301..516483 (+) 183 WP_126438393.1 ABC transporter ATP-binding protein -
  LK450_RS02560 (LK450_02560) xerS 516738..517808 (+) 1071 WP_018543480.1 tyrosine recombinase XerS Machinery gene
  LK450_RS02565 (LK450_02565) ucpA 517870..518667 (-) 798 WP_003033189.1 SDR family oxidoreductase UcpA -
  LK450_RS02570 (LK450_02570) - 519019..520008 (-) 990 WP_003033190.1 lipoate--protein ligase -
  LK450_RS02575 (LK450_02575) lpdA 520017..521723 (-) 1707 WP_003033187.1 dihydrolipoyl dehydrogenase -
  LK450_RS02580 (LK450_02580) - 521755..522798 (-) 1044 WP_003033188.1 dihydrolipoamide acetyltransferase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41301.36 Da        Isoelectric Point: 9.3193

>NTDB_id=539176 LK450_RS02560 WP_018543480.1 516738..517808(+) (xerS) [Streptococcus anginosus subsp. anginosus strain FDAARGOS_1569]
MKREILLERIEKLKAIMPWYVLEYYQSKLTVPYSFTTLYEYLKEYDRFFHWILDSGIADGPQIAEIPLSVLENMTKKDME
AFILYLRERPLLNANTTQNGVSQTTINRTLSALSSLYKYLTEEVENENGEPYFYRNVMKKVSTKKKRETLAARAENIKQK
LFLGEETEQFLNYIDEEYPKNLSNRALSSFDKNKERDLAIIALLLASGVRLSEAVNLDLKDLNLKMMVIEVTRKGGKRDS
VNVAAFAKAYLERYLEVRSKRYKAEKSDTALFLTEYRGVPNRIDASSVEKMVAKYSEDFKVRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=539176 LK450_RS02560 WP_018543480.1 516738..517808(+) (xerS) [Streptococcus anginosus subsp. anginosus strain FDAARGOS_1569]
ATGAAACGCGAAATATTGTTAGAAAGAATTGAAAAACTAAAGGCCATCATGCCTTGGTACGTTTTGGAATACTATCAGTC
TAAATTGACTGTTCCATACAGTTTTACAACCTTATATGAATATCTCAAAGAATATGATCGCTTTTTTCATTGGATTTTAG
ACTCTGGAATTGCTGATGGGCCGCAGATTGCAGAAATTCCTCTGTCAGTATTGGAAAATATGACTAAAAAAGATATGGAA
GCGTTTATTCTTTACTTACGGGAGCGTCCATTGCTTAATGCTAATACTACGCAAAACGGAGTATCGCAAACCACCATTAA
TCGAACTCTTTCTGCTCTCTCTAGCCTTTATAAATATTTAACTGAAGAGGTGGAAAACGAGAATGGGGAACCTTATTTCT
ATCGTAATGTCATGAAAAAAGTGTCTACTAAGAAAAAGAGAGAGACTTTAGCTGCGCGCGCTGAAAACATCAAGCAAAAA
CTCTTTTTGGGCGAAGAAACTGAACAATTTTTGAATTATATTGATGAAGAATACCCTAAAAATTTATCAAATCGGGCTCT
CTCCTCTTTTGACAAAAATAAAGAGCGAGATTTGGCAATCATAGCACTGCTTCTTGCATCTGGTGTTCGTCTATCCGAGG
CAGTAAATCTTGATTTGAAAGACCTAAATCTCAAAATGATGGTCATTGAAGTTACTCGTAAGGGCGGGAAAAGAGATTCT
GTCAATGTTGCAGCTTTTGCCAAAGCTTATTTGGAAAGGTACCTGGAGGTTCGCTCTAAACGTTATAAAGCTGAAAAATC
AGACACTGCCCTCTTTTTGACAGAATATAGAGGTGTTCCTAACCGGATTGATGCTTCTAGTGTAGAAAAGATGGTTGCTA
AGTATTCTGAAGATTTCAAAGTTCGAGTGACACCTCACAAACTCCGCCATACGCTGGCTACTCGACTTTATGATGCTACT
AAATCTCAAGTTTTGGTCAGTCATCAGCTAGGACATGCCAGTACTCAAGTTACAGATCTCTACACCCATATTGTTAATGA
CGAACAAAAAAATGCATTGGATAATTTATAA

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)

Phage integrase family (Phage_integrase)

(188-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

88.483

100

0.885