Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   LK450_RS00360 Genome accession   NZ_CP085939
Coordinates   64512..66170 (+) Length   552 a.a.
NCBI ID   WP_003031389.1    Uniprot ID   -
Organism   Streptococcus anginosus subsp. anginosus strain FDAARGOS_1569     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 59512..71170
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK450_RS00325 (LK450_00325) - 59946..60143 (+) 198 WP_003031402.1 TraX family protein -
  LK450_RS00330 (LK450_00330) - 60171..60680 (+) 510 WP_022524457.1 hypothetical protein -
  LK450_RS00335 (LK450_00335) xseA 60870..62210 (+) 1341 WP_003031416.1 exodeoxyribonuclease VII large subunit -
  LK450_RS00340 (LK450_00340) - 62188..62400 (+) 213 WP_003031417.1 exodeoxyribonuclease VII small subunit -
  LK450_RS00345 (LK450_00345) - 62397..63299 (+) 903 WP_003031414.1 polyprenyl synthetase family protein -
  LK450_RS00350 (LK450_00350) - 63265..64080 (+) 816 WP_003031420.1 TlyA family RNA methyltransferase -
  LK450_RS00355 (LK450_00355) - 64073..64504 (+) 432 WP_003031395.1 arginine repressor -
  LK450_RS00360 (LK450_00360) recN 64512..66170 (+) 1659 WP_003031389.1 DNA repair protein RecN Machinery gene
  LK450_RS00365 (LK450_00365) - 66217..66948 (+) 732 WP_003031430.1 metallophosphoesterase -
  LK450_RS00370 (LK450_00370) - 67011..67985 (-) 975 WP_003031428.1 siderophore ABC transporter substrate-binding protein -
  LK450_RS00375 (LK450_00375) - 68009..68761 (-) 753 WP_003023720.1 ABC transporter ATP-binding protein -
  LK450_RS00380 (LK450_00380) - 68763..69725 (-) 963 WP_003031397.1 iron chelate uptake ABC transporter family permease subunit -
  LK450_RS00385 (LK450_00385) - 69718..70671 (-) 954 WP_018543565.1 ABC transporter permease -

Sequence

Protein


Download         Length: 552 a.a.        Molecular weight: 62337.57 Da        Isoelectric Point: 4.5655

>NTDB_id=539160 LK450_RS00360 WP_003031389.1 64512..66170(+) (recN) [Streptococcus anginosus subsp. anginosus strain FDAARGOS_1569]
MLLEISIKNFAIIEEISLNFEQGMTVLTGETGAGKSIIIDAMNMMLGSRATTDVIRHGASKAEIEGLFAIEQSKALVEIF
EQQGLDMTEELIIRREIFQNGRSVSRINGQMVNLSVLRAVGQHLVDIHGQHDQEELMRPQLHIAMLDEFGDDAFFKLKAD
YQQTFDQYRQLRKQVLTIQKNQEENKARIDMLEYQIAEIEAANLKAGEDLALNQERDKLLNHKQIADTLTNAYAMLDDEE
FSSLANVRSAMNDMEAIEDYDATYKEIATNLSESYYVLEDVTKRLEDILEDLDFDGGRLLEVESRLDLIYSITRKYGGQV
DDVLAYFEQISKEYALLTGKNLSSDDLNKELKKLEKDLVSLAGRLSQARHELAQQLEAEIQQELQDLYMEKANFRVQFTK
GKFSRDGNEHVEFYISTNPGEDYKPLVKVASGGELSRLMLAIKSAFSRKEGKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
SNGQVLAISHLPQVIAIADYQFFIEKISDEHSTVSTVRLLSNDERVEEIAKMLAGENVTQAALTQARELLKK

Nucleotide


Download         Length: 1659 bp        

>NTDB_id=539160 LK450_RS00360 WP_003031389.1 64512..66170(+) (recN) [Streptococcus anginosus subsp. anginosus strain FDAARGOS_1569]
ATGTTACTTGAAATTTCCATTAAAAATTTTGCAATTATTGAAGAGATTTCCCTCAATTTTGAGCAAGGCATGACCGTTTT
GACAGGTGAAACAGGGGCTGGAAAGTCTATTATTATTGATGCTATGAACATGATGCTAGGAAGCCGCGCGACAACAGATG
TGATTCGTCACGGTGCATCAAAAGCAGAGATTGAAGGGCTTTTTGCAATTGAGCAGAGTAAGGCTTTGGTTGAAATTTTT
GAGCAGCAAGGGCTTGATATGACAGAGGAGCTGATTATTCGGCGGGAAATTTTTCAAAATGGACGTAGTGTCAGTCGTAT
TAATGGTCAAATGGTTAATTTGTCTGTCTTGCGAGCTGTTGGACAGCATTTGGTGGATATTCACGGTCAACACGACCAAG
AAGAACTCATGCGACCGCAGCTGCATATTGCCATGTTGGACGAGTTTGGAGATGACGCATTTTTCAAGCTCAAAGCTGAT
TATCAACAGACTTTTGATCAGTATCGTCAGTTGCGTAAGCAGGTCTTAACAATTCAAAAGAATCAAGAAGAAAATAAAGC
GCGGATTGACATGCTGGAATATCAAATTGCAGAGATTGAAGCAGCTAATTTAAAAGCAGGTGAAGATTTAGCTTTAAATC
AAGAACGTGATAAGTTGCTCAATCATAAGCAGATTGCGGACACTTTGACCAATGCTTATGCCATGCTGGATGATGAAGAA
TTTTCTAGTTTAGCGAATGTTCGTTCTGCCATGAATGACATGGAAGCTATTGAAGACTATGACGCCACTTACAAAGAAAT
TGCGACCAACCTTTCTGAATCTTACTATGTGTTGGAAGATGTGACAAAGCGTTTGGAGGATATTCTAGAAGACTTGGATT
TTGATGGTGGCCGTCTCTTAGAAGTAGAAAGTCGCCTAGATTTAATCTATAGTATTACTCGCAAATACGGCGGTCAAGTA
GATGATGTCCTAGCTTATTTTGAGCAGATTTCTAAAGAATATGCTCTACTTACTGGAAAAAACCTTTCATCAGATGATTT
GAACAAAGAGCTGAAAAAGCTGGAAAAAGACTTGGTTTCTCTAGCAGGTCGTCTGAGTCAGGCTCGGCACGAATTAGCCC
AGCAGTTAGAAGCAGAGATTCAGCAAGAACTGCAAGACCTCTATATGGAAAAGGCGAATTTTCGAGTTCAATTTACCAAG
GGAAAATTTAGCCGCGATGGGAATGAACACGTTGAATTTTATATTTCGACTAATCCCGGTGAAGATTACAAACCGCTCGT
TAAGGTTGCTTCAGGTGGTGAATTGTCTCGTTTAATGTTGGCAATCAAGTCTGCTTTTTCTCGCAAGGAAGGCAAGACCA
GCATTGTCTTTGATGAAGTAGATACAGGTGTATCGGGACGTGTTGCACAAGCTATTGCCCAAAAGATTCATAAGATTGGC
TCAAACGGACAGGTCCTTGCCATCTCGCACTTACCTCAAGTGATTGCAATCGCGGATTATCAATTTTTCATTGAAAAAAT
ATCTGATGAGCATTCGACCGTTTCAACTGTTCGCTTGTTATCAAATGATGAGCGTGTCGAAGAAATTGCCAAAATGTTGG
CGGGCGAAAATGTGACCCAAGCAGCCCTCACGCAGGCTAGAGAGCTCTTGAAAAAATGA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.761

100

0.451