Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   JQN77_RS11480 Genome accession   NZ_CP070306
Coordinates   2358462..2359532 (-) Length   356 a.a.
NCBI ID   WP_000776421.1    Uniprot ID   -
Organism   Staphylococcus sp. SM9054     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2353462..2364532
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQN77_RS11440 (JQN77_11440) gcvPA 2353639..2354985 (-) 1347 WP_000019691.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  JQN77_RS11445 (JQN77_11445) gcvT 2355005..2356096 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  JQN77_RS11450 (JQN77_11450) - 2356255..2356779 (-) 525 WP_001015121.1 shikimate kinase -
  JQN77_RS11455 (JQN77_11455) - 2356769..2356915 (-) 147 WP_001789879.1 hypothetical protein -
  JQN77_RS11460 (JQN77_11460) comGF 2357012..2357509 (-) 498 WP_029694050.1 competence type IV pilus minor pilin ComGF Machinery gene
  JQN77_RS11465 (JQN77_11465) comGE 2357427..2357726 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  JQN77_RS11470 (JQN77_11470) comGD 2357713..2358159 (-) 447 WP_072433556.1 competence type IV pilus minor pilin ComGD Machinery gene
  JQN77_RS11475 (JQN77_11475) comGC 2358137..2358448 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  JQN77_RS11480 (JQN77_11480) comGB 2358462..2359532 (-) 1071 WP_000776421.1 competence type IV pilus assembly protein ComGB Machinery gene
  JQN77_RS11485 (JQN77_11485) comGA 2359504..2360478 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  JQN77_RS11490 (JQN77_11490) - 2360530..2361153 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  JQN77_RS11495 (JQN77_11495) - 2361150..2361479 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  JQN77_RS11500 (JQN77_11500) - 2361479..2362465 (-) 987 WP_000161314.1 ROK family glucokinase -
  JQN77_RS11505 (JQN77_11505) - 2362462..2362665 (-) 204 WP_000087561.1 YqgQ family protein -
  JQN77_RS11510 (JQN77_11510) - 2362646..2364109 (-) 1464 WP_001017867.1 rhomboid family intramembrane serine protease -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41429.81 Da        Isoelectric Point: 10.0606

>NTDB_id=539155 JQN77_RS11480 WP_000776421.1 2358462..2359532(-) (comGB) [Staphylococcus sp. SM9054]
MKLQWINTFKLHSKKRQLSKAQQIDLLSNLCNLLKYGFTLYQSFQFLNLQMTYKNKQLGTTILSEISNGAPCNQILSLIG
YSDTIVMQVYLAERFGNIIDVLEETVNYMKVNRKSEQRLLKTLQYPLILVSIFIAMIIILNLTVIPQFQQLYTSMNIQLS
SFQKTLSFFITSLPTIIVVMLIIVSMLAIIMKLIYNNLNMLNKINFVMKLPLISGYFQLFKTYFVTNELVLFYKNGITLQ
SIVDVYINHSSDPFRQFLGKYLLTYSEMGYGLPQILEKLKCFKPQLIKFVLQGEKRGKLEVELKLYSQILVKQIEDKAIK
QTQFLQPILFLILGLFIVAIYLVIMLPMFQLMQSIK

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=539155 JQN77_RS11480 WP_000776421.1 2358462..2359532(-) (comGB) [Staphylococcus sp. SM9054]
GTGAAACTACAATGGATAAATACATTTAAACTACATTCTAAGAAGCGACAATTAAGTAAGGCCCAACAAATCGATTTACT
TTCAAATTTATGTAATTTGTTGAAATATGGTTTCACTCTGTATCAAAGTTTTCAATTTTTAAATCTTCAAATGACATATA
AAAATAAGCAATTAGGTACCACCATTCTAAGTGAAATTTCAAATGGTGCACCATGCAATCAAATATTATCACTGATAGGT
TATAGCGATACTATCGTCATGCAAGTATATTTGGCAGAAAGATTTGGCAATATTATAGACGTTCTAGAAGAAACCGTAAA
TTATATGAAAGTGAATAGAAAGTCAGAACAACGATTGTTAAAGACACTGCAATACCCCTTAATACTAGTTTCTATCTTTA
TTGCTATGATTATTATATTAAACCTCACAGTAATTCCACAGTTTCAACAATTATATACTTCTATGAATATTCAACTATCT
TCTTTTCAAAAAACATTGTCTTTTTTCATTACCAGCTTACCTACTATAATTGTAGTAATGCTCATAATAGTATCTATGTT
GGCTATTATTATGAAATTAATTTATAACAATTTAAATATGCTCAATAAGATAAACTTTGTGATGAAACTACCGCTAATAT
CAGGCTATTTCCAATTATTTAAAACTTATTTTGTAACTAATGAATTAGTGTTGTTTTATAAAAATGGTATTACACTTCAA
TCAATAGTAGACGTTTATATTAACCATAGTAGTGATCCATTTAGACAGTTTCTAGGTAAATACTTATTAACTTATTCAGA
AATGGGATATGGTTTGCCTCAAATTTTAGAAAAACTAAAATGCTTTAAGCCTCAATTAATTAAGTTTGTGCTACAAGGTG
AAAAGAGAGGGAAGCTAGAAGTAGAACTAAAGTTATATTCGCAAATATTAGTAAAACAAATAGAAGATAAAGCGATAAAA
CAGACTCAGTTTTTACAGCCTATTTTATTTTTGATTTTAGGTTTATTTATTGTCGCAATTTATTTAGTAATTATGTTACC
AATGTTTCAATTGATGCAAAGTATAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(227-347)

Type II secretion system (T2SS), protein F (T2SSF)

(27-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

99.719

100

0.997
  comGB Staphylococcus aureus N315

99.719

100

0.997